Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02321 ATGATGAACGCCGGATATGATATTAATTATCTTTACCGAGAAGCACAAACACGTTGGCTGAAGCCTCCAGAAGTGCTTTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGCAGAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCATTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGGAAGGTCCGGGATGGAAAGTGTTCCACAATCATCTCCAGCATCAGTTTCTACTTCCGGTTCCTGTTCATCCCAAAATCTTGCTTCAGAATATCAACAGACTTCATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGACACTGGCAACCATACTATCGAGTCAAATGGCGTGGATGGGCATTTCGAAATATTAGAAACAAAAGGTTCAAATGAACCTGATGTTTCTCAAGCGTTGAGAAGGATTGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGATTCATTTTATCGTCAGGATGAAGGTTCAAATTCGAACCTTGTAGACTTCTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTTCAGCATCCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATGCAAGATGCTGATGGAAAACATCAACATTACAATATGGCACACGGGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGATGGTGCACTTGATTCAAGTAAGACAGCCGTTCTTGAGTCTCATGATCGACATTCTCTCCTATGGAATGAAAAAGAAAAACCATCATCATCTTCTACTGTTGACAATGAACATTGCAACTGGCTGTACAGCAGAGGAAAAGCTTTTCCTATGCTCGGAAGCTGCACATCGACAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAGCAGGGTTATGCCACTGAGACTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTCTAGAATCTCCATGGGCTTGTATGTTTGGAGACATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTTGCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCCCATTCAACTGGAGCTGCGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATCCAGAAATCTGACAGGTTAGATACTGGATTTAGGAGCAATAGTTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGCGAAACTCCTTCTAGTACCACCGATTGGCTTTTTCAAGAATTGCTAAAAGACAAGTTGCTACTTTGGCTTTCTTCGCAACAGAAAGATAGGCACAATCTAACAGGCTGTCTTTTGTCCAAGAAAGAACAAGGCGTTATACACATGATAGCTGGCTTGGGCTATGTGTGGGCACTTAACCCAATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGGTGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCCGTGACTGATCCTAGTTCACAAAATCCAGATGGTAAAACTGCAGCATCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTTGCACTTACTAGTCATCTCTCATCCCTCACATTTGAAGAAAGTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTCAATTGCATTTCAAATGGGAATCTCTCTTCTGCTGAGGACTATATCCCTCTAAAAAATACGTTAGCAGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGCGCCCATTCTTTCAGGAAGCGACAGCAGAAAGAGGCAGCCTTTGCAGCTTGTATGGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTCGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCAGCTGCATTATCCATTCAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCACTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTCGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGCTTGAGAGGGTTTCGTAGTGAGATAGGATCCATTGATGAAAGTGAGGATGATGATATTTTAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAAACATTGATGAAGCTGTTTCACGAGTCCTATCCATGGTTGACTCTCCGGATGCTCGTCAACAATATCATCGTATGCTTGAAGGATTCCGAGAAGCCAAGGCTGAACTCGATGGTGCCAGTAAAAAATCAGCAGCGTCAACTTCTCTCACCGATGTTTCAGGAATGGAAGATTGTAATCAATATCCCAAGTTCATATAG 2889 42.02 MMNAGYDINYLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGMESVPQSSPASVSTSGSCSSQNLASEYQQTSLSPGSVEVSSDTGNHTIESNGVDGHFEILETKGSNEPDVSQALRRIEEQLSLNEDSLKDIDSFYRQDEGSNSNLVDFYEMSNEDQFSVLQHPENAIHDNNYTSFEMQDADGKHQHYNMAHGFIFSGEGTQPWDGALDSSKTAVLESHDRHSLLWNEKEKPSSSSTVDNEHCNWLYSRGKAFPMLGSCTSTEYSSPLDTHDVNSNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATETTKVIIIGSFLCDPLESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVAFCITSGNREPCSEVREFEYKMNVCSHCQSHSTGAAKSPEELLLLVRLVQLLLSDSSIQKSDRLDTGFRSNSLKAGDDQWSSLIEALLVGSETPSSTTDWLFQELLKDKLLLWLSSQQKDRHNLTGCLLSKKEQGVIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQNPDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELSKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACMDEYGIDPNDIQGLFAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDESEDDDILKVFRKQKVEGNIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAELDGASKKSAASTSLTDVSGMEDCNQYPKFI 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30254567 30267985 - MELO3C022312.2.1 Cme11g02321 342984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02321 962 SUPERFAMILY Ankyrin repeat 595 687 IPR036770 -
Cme11g02321 962 Pfam IPT/TIG domain 398 475 IPR002909 -
Cme11g02321 962 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Cme11g02321 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 852 IPR027417 -
Cme11g02321 962 SUPERFAMILY E set domains 398 481 IPR014756 -
Cme11g02321 962 ProSiteProfiles Ankyrin repeat region circular profile. 626 652 - -
Cme11g02321 962 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Cme11g02321 962 MobiDBLite consensus disorder prediction 134 184 - -
Cme11g02321 962 Gene3D Immunoglobulins 392 485 IPR013783 -
Cme11g02321 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 948 - -
Cme11g02321 962 SMART iq_5 800 822 IPR000048 GO:0005515
Cme11g02321 962 SMART iq_5 823 845 IPR000048 GO:0005515
Cme11g02321 962 SMART iq_5 743 765 IPR000048 GO:0005515
Cme11g02321 962 Pfam IQ calmodulin-binding motif 803 821 IPR000048 GO:0005515
Cme11g02321 962 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Cme11g02321 962 ProSiteProfiles IQ motif profile. 824 848 IPR000048 GO:0005515
Cme11g02321 962 Pfam Ankyrin repeats (3 copies) 602 685 IPR002110 GO:0005515
Cme11g02321 962 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Cme11g02321 962 SMART CG_1_2 11 129 IPR005559 GO:0003677
Cme11g02321 962 Gene3D - 801 848 - -
Cme11g02321 962 SMART ANK_2a 626 655 IPR002110 GO:0005515
Cme11g02321 962 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Cme11g02321 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 948 - -
Cme11g02321 962 MobiDBLite consensus disorder prediction 132 187 - -
Cme11g02321 962 Gene3D - 565 695 IPR036770 -
Cme11g02321 962 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02483 Cme-Chr8:31736008 Cme11g02321 Cme-Chr11:30254567 2.52E-44 dispersed
Cme11g02068 Cme-Chr11:28393905 Cme11g02321 Cme-Chr11:30254567 7.85E-123 dispersed
Cme11g02321 Cme-Chr11:30254567 Cme01g00580 Cme-Chr1:4439268 2.74E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42257 PF03859 CG-1 4.60E-48 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02321 K21596 - csv:101222798 1792.32