Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02324 ATGGGAAGAGGGAGAGTAGAACTGAAGAGAATAGAGAACAAGATCAATAGACAAGTGACATTCGCTAAACGAAGAAATGGTCTATTGAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGCAAACTCTATGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTAGAGAGATACCAAAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAACTTAAAGCTCGCTATGAAGCTCTCCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAAAATCTTGAAAGGCAACTTGATATGTCACTCAAGCAAATCAGATCAACAAGGACTCAGTATATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCACCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCCTACAAATTGGGTATCAACCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 729 42.11 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELENLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30303986 30310526 - MELO3C022316.2.1 Cme11g02324 342987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02324 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme11g02324 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme11g02324 242 Coils Coil 126 146 - -
Cme11g02324 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cme11g02324 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cme11g02324 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme11g02324 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cme11g02324 242 Coils Coil 152 172 - -
Cme11g02324 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Cme11g02324 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Cme11g02324 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme11g02324 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme11g02324 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme11g02324 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme11g02324 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme11g02324 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00946 Cme-Chr6:6703218 Cme11g02324 Cme-Chr11:30303986 4.77E-55 dispersed
Cme07g01021 Cme-Chr7:11591766 Cme11g02324 Cme-Chr11:30303986 1.11E-109 dispersed
Cme09g01706 Cme-Chr9:21690768 Cme11g02324 Cme-Chr11:30303986 1.40E-43 dispersed
Cme11g02324 Cme-Chr11:30303986 Cme12g01921 Cme-Chr12:25243840 1.39E-84 dispersed
Cme11g02531 Cme-Chr11:31756996 Cme11g02324 Cme-Chr11:30303986 2.57E-45 dispersed
Cme12g01251 Cme-Chr12:20640594 Cme11g02324 Cme-Chr11:30303986 4.87E-48 dispersed
Cme08g00026 Cme-Chr8:211301 Cme11g02324 Cme-Chr11:30303986 1.79E-34 transposed
Cme11g02324 Cme-Chr11:30303986 Cme12g01580 Cme-Chr12:23153682 5.04E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42258 PF01486 K-box 3.20E-26 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02324 - - csv:101216798 481.87