Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02324 | ATGGGAAGAGGGAGAGTAGAACTGAAGAGAATAGAGAACAAGATCAATAGACAAGTGACATTCGCTAAACGAAGAAATGGTCTATTGAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGCAAACTCTATGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTAGAGAGATACCAAAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAACTTAAAGCTCGCTATGAAGCTCTCCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAAAATCTTGAAAGGCAACTTGATATGTCACTCAAGCAAATCAGATCAACAAGGACTCAGTATATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCACCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCCTACAAATTGGGTATCAACCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA | 729 | 42.11 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELENLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30303986 | 30310526 | - | MELO3C022316.2.1 | Cme11g02324 | 342987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02324 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | Coils | Coil | 126 | 146 | - | - | |
Cme11g02324 | 242 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cme11g02324 | 242 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme11g02324 | 242 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | Coils | Coil | 152 | 172 | - | - | |
Cme11g02324 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 229 | - | - | |
Cme11g02324 | 242 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 229 | - | - | |
Cme11g02324 | 242 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme11g02324 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02324 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00946 | Cme-Chr6:6703218 | Cme11g02324 | Cme-Chr11:30303986 | 4.77E-55 | dispersed | |
Cme07g01021 | Cme-Chr7:11591766 | Cme11g02324 | Cme-Chr11:30303986 | 1.11E-109 | dispersed | |
Cme09g01706 | Cme-Chr9:21690768 | Cme11g02324 | Cme-Chr11:30303986 | 1.40E-43 | dispersed | |
Cme11g02324 | Cme-Chr11:30303986 | Cme12g01921 | Cme-Chr12:25243840 | 1.39E-84 | dispersed | |
Cme11g02531 | Cme-Chr11:31756996 | Cme11g02324 | Cme-Chr11:30303986 | 2.57E-45 | dispersed | |
Cme12g01251 | Cme-Chr12:20640594 | Cme11g02324 | Cme-Chr11:30303986 | 4.87E-48 | dispersed | |
Cme08g00026 | Cme-Chr8:211301 | Cme11g02324 | Cme-Chr11:30303986 | 1.79E-34 | transposed | |
Cme11g02324 | Cme-Chr11:30303986 | Cme12g01580 | Cme-Chr12:23153682 | 5.04E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42258 | PF01486 | K-box | 3.20E-26 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02324 | - | - | csv:101216798 | 481.87 |