Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02326 | ATGTATTGGGAACTCAGGGGCATTGGTAATATGGACGAAAGATCTATGGATGACATGAAAGGAACTCGAGTTGCTTTAATTGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGTAGTGGAGCCCAAGTCCCTTCGTGTATGGTAGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCACCGCCGTCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGCGGAGTTTGATGATAGAAAACGAAGTTGTAGGAAACGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCCTTTGGTAATCAATTACTGTCGGCCAGCAGTGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGCGCCACTTTGTGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGTTCGTTGTCTTCTGATTACAAAGAAAAACAGCTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCCATTTCATTCACAGCGACGGTCTTGGCTTGGAGGGTGACCCCATTAGTTCTGGTTTAGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCAACATTCCAGGACGGACCTGATGGATCATCTGGTGATCTATTCAGGTTTTGA | 987 | 47.01 | MYWELRGIGNMDERSMDDMKGTRVALIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLAEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASSDVSSSWIGMIKPENNAPLCGGNSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDANIRCYSTFQDGPDGSSGDLFRF | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30336669 | 30339983 | - | MELO3C022318.2.1 | Cme11g02326 | 342989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02326 | 328 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677 | |
Cme11g02326 | 328 | Gene3D | - | 41 | 111 | IPR036893 | GO:0003677|GO:0005634 | |
Cme11g02326 | 328 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 | 8 | 321 | - | - | |
Cme11g02326 | 328 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 8 | 321 | IPR044817 | GO:0003677 | |
Cme11g02326 | 328 | SUPERFAMILY | SBT domain | 48 | 129 | IPR036893 | GO:0003677|GO:0005634 | |
Cme11g02326 | 328 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01810 | Cme-Chr2:24881083 | Cme11g02326 | Cme-Chr11:30336669 | 2.45E-43 | dispersed | |
Cme11g02326 | Cme-Chr11:30336669 | Cme12g01922 | Cme-Chr12:25258035 | 2.37E-37 | dispersed | |
Cme06g00038 | Cme-Chr6:273415 | Cme11g02326 | Cme-Chr11:30336669 | 4.04E-35 | transposed | |
Cme07g00013 | Cme-Chr7:129531 | Cme11g02326 | Cme-Chr11:30336669 | 1.01E-34 | transposed | |
Cme11g02326 | Cme-Chr11:30336669 | Cme12g01579 | Cme-Chr12:23147562 | 3.15E-49 | wgd | |
Cme11g02326 | Cme-Chr11:30336669 | Cme02g02077 | Cme-Chr2:26689297 | 2.23E-50 | wgd | |
Cme11g02326 | Cme-Chr11:30336669 | Cme06g01786 | Cme-Chr6:20873962 | 1.20E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42259 | PF03110 | SBP | 2.70E-29 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02326 | - | - | csv:101217032 | 663.685 |