Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02326 ATGTATTGGGAACTCAGGGGCATTGGTAATATGGACGAAAGATCTATGGATGACATGAAAGGAACTCGAGTTGCTTTAATTGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGTAGTGGAGCCCAAGTCCCTTCGTGTATGGTAGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCACCGCCGTCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGCGGAGTTTGATGATAGAAAACGAAGTTGTAGGAAACGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCCTTTGGTAATCAATTACTGTCGGCCAGCAGTGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGCGCCACTTTGTGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGTTCGTTGTCTTCTGATTACAAAGAAAAACAGCTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCCATTTCATTCACAGCGACGGTCTTGGCTTGGAGGGTGACCCCATTAGTTCTGGTTTAGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCAACATTCCAGGACGGACCTGATGGATCATCTGGTGATCTATTCAGGTTTTGA 987 47.01 MYWELRGIGNMDERSMDDMKGTRVALIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLAEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASSDVSSSWIGMIKPENNAPLCGGNSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDANIRCYSTFQDGPDGSSGDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30336669 30339983 - MELO3C022318.2.1 Cme11g02326 342989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02326 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cme11g02326 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Cme11g02326 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 8 321 - -
Cme11g02326 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 321 IPR044817 GO:0003677
Cme11g02326 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Cme11g02326 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01810 Cme-Chr2:24881083 Cme11g02326 Cme-Chr11:30336669 2.45E-43 dispersed
Cme11g02326 Cme-Chr11:30336669 Cme12g01922 Cme-Chr12:25258035 2.37E-37 dispersed
Cme06g00038 Cme-Chr6:273415 Cme11g02326 Cme-Chr11:30336669 4.04E-35 transposed
Cme07g00013 Cme-Chr7:129531 Cme11g02326 Cme-Chr11:30336669 1.01E-34 transposed
Cme11g02326 Cme-Chr11:30336669 Cme12g01579 Cme-Chr12:23147562 3.15E-49 wgd
Cme11g02326 Cme-Chr11:30336669 Cme02g02077 Cme-Chr2:26689297 2.23E-50 wgd
Cme11g02326 Cme-Chr11:30336669 Cme06g01786 Cme-Chr6:20873962 1.20E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42259 PF03110 SBP 2.70E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02326 - - csv:101217032 663.685