Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02330 ATGGATTCTTCTCTCAACTCGGTTTTGGTGGAATATAGAGCCTCTGCCAATGCTTTCCTGTCCAAATACGAGCCACTGGCTCTCGTTTTTGGTCCTCTTTTGGTCCTACTATTGGCTCGGCTGCTTCAGTCATTTCTGGATCTTGTTTACGAAGCAGGACTTAAAGCTACCTTCTTATCGTTCTTCATGGCTACGATTAAGTTAATTCCTGGGGTGAAACGTCGGATCGATTCTGAGAAGCAGAAGGTTGTGGAAAAATTACAATCCGGCGGTAATTCTAAAAGAGAAAGTTGGAGGACTGAGTTGCCAATGGCCGGCCTGGGAACTGAAGTCATTGAGAAAATGAAAAATGAGAAACAAAAAGATGTGGTTTGGCAAGGAAAATGCTCGGGTACAGTCTACATTGGAGGATCTGAATCTGAAGGTCATTTTTCTCTCATAAACGAGGCATGTTCAATGTTTGCACATACAAATCCTTTACATTTGGATGTATTTCAAAGTGTGGTGCGGTTTGAAGCTGAAGTAGTGGCCATGACTGCTGCTCTTCTTGGCAGTAAAGTGGAGGCTTCTGGAGGGCAAATCTGTGGAAACATGACATCAGGAGGAACTGAAAGCATACTGTTGGCTGTGAAGTCAACACGTGACTATATGAAATCCAAGAAGGGAATTAAAAAACCTGAAATGATAATACCTGAGTCTGCACATTCAGCATATGATAAGGCTGCTCACTATTTTAATATCAAGCTGTGGCGTGTCCCTGTAAACAAAGAATTCAAAGCAGATGTGAAAGCTATTCGGAAATTTATCAACAGGAATACTATCTTGATTGTTGGATCTGCGCCTGGGTTTCCTCACGGAATCATTGATCCGATTGTTGAACTTGGGGAATTAGCTTCTAGCTCTGGCATTTGTCTGCACGTTGACTTTTGTCTTGGCGGCTTTGTGTTGCCGTTTGCGCGCAAGCTTGGGTACCCAATTCCACCTTGTGATTTTTCAGTTAAAGGAGTGACATCGATATCTGTGGATGTACATAAATATGGATTAGCACCCAAAGGAACAAGTGTGGTTTTGTACAGAAATCATGAGATTAGAAAGCATCAATTTGTTGCTGTAAGTGAGTGGTCTGGTGGGCTTTACGTCTCTCCAACAATAGCTGGAAGCAGACCCGGTGGCTTGATTGCTGGGGCTTGGGCAGCAATGATGTCTTTGGGAGAAGAAGGATATTTGCAGAACACAAAAGAGATCATGGAAGTATCAAAGAGGATACATAGGGGGATAAACGAAATACCCGAGTTATTTGTTATCGGAAAGCCAGACATGACAATTATAGCATTTGGGTCTACTGCTCTTGACATTTTTGAAGTCAACGACATTATGTCATCAAAAGGCTGGCATTTGAATGCCTTGCAAAAGCCTAGCAGTATTCACATCTGCGTGACGCTTCAGCATGTATCTATAGTCGACAACTTTCTCCAGGACCTGCAAGAATCTGTCACCATTGTAAAAAAGAATCCAGGTCCAATTAATGGAGGATTAGCTCCAATATATGGTGCAGCAGAGAGAATGCCAGATAGATCTATGGTTCAAGAGTTGCTCATAAGTTACATGGATGGTACATGCTAG 1623 42.51 MDSSLNSVLVEYRASANAFLSKYEPLALVFGPLLVLLLARLLQSFLDLVYEAGLKATFLSFFMATIKLIPGVKRRIDSEKQKVVEKLQSGGNSKRESWRTELPMAGLGTEVIEKMKNEKQKDVVWQGKCSGTVYIGGSESEGHFSLINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKVEASGGQICGNMTSGGTESILLAVKSTRDYMKSKKGIKKPEMIIPESAHSAYDKAAHYFNIKLWRVPVNKEFKADVKAIRKFINRNTILIVGSAPGFPHGIIDPIVELGELASSSGICLHVDFCLGGFVLPFARKLGYPIPPCDFSVKGVTSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVSEWSGGLYVSPTIAGSRPGGLIAGAWAAMMSLGEEGYLQNTKEIMEVSKRIHRGINEIPELFVIGKPDMTIIAFGSTALDIFEVNDIMSSKGWHLNALQKPSSIHICVTLQHVSIVDNFLQDLQESVTIVKKNPGPINGGLAPIYGAAERMPDRSMVQELLISYMDGTC 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30373907 30380684 + MELO3C022321.2.1 Cme11g02330 342993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02330 540 Pfam Pyridoxal-dependent decarboxylase conserved domain 153 445 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cme11g02330 540 SUPERFAMILY PLP-dependent transferases 122 504 IPR015424 -
Cme11g02330 540 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 20 540 - -
Cme11g02330 540 PANTHER - 20 540 - -
Cme11g02330 540 Gene3D - 137 404 IPR015421 GO:0003824
Cme11g02330 540 Gene3D Aspartate Aminotransferase, domain 1 109 503 IPR015422 GO:0003824
Cme11g02330 540 Gene3D - 101 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02330 K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27] - csv:101217975 1022.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00683 Cme-Chr8:4525002 Cme11g02330 Cme-Chr11:30373907 7.77E-07 dispersed
Cme11g02330 Cme-Chr11:30373907 Cme12g02043 Cme-Chr12:25911934 3.10E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1276 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00190 Cam06g0020 Cec06g0209 Cco06g0204 Clacu06g0207 Cmu06g0200 Cre06g0974 . . . . . . Chy11g01799 Cme11g02330 . . . . . . . . . . . . . . . Cpe17g01064 . Bhi12g02438 Tan06g1502 . . . . . . . . . . . . Lsi09g01734 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007917 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 36