Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02338 AAGGGTCAAAATCAGAATGGAAATAAAAAGCAAGAAGAAGAGAAGGGAAAGGGAAAGAAAGAAGAACAACAGAAAAAGATCATAACAGAAGTTGTGATTAAAGTTTATATGCATTGTGAAGCCTGCCAACATAAACTCTCTAAATGCTTGAAAGCTTCTTCCCATGGTGTGGAGGAAGTGGCAGCTGATATGGAAAATAAGAAAGTAGTAATAAAAGGAAAAGATCTTAATCCAAAGAAAATAATGGAAGAAATTAAGAAAAAATACTCAAAAAATGTGGAACTTATTTCTCCTAAGGACCTGCCTGATACTCCCAAACAAAACAAACCTCAACCTAAAAAGGAAGAGGTTCAAATGAAGACTGTGGAACTAAAAATGAATATGCATTGTGAAGGCTGTGAAAATGACATCAAAGAAACCATTGGAAAAATGGAAGGAGTAATGAGAGTGGAAACAAATAGAGAGAGTTCAAAAGTGATAGTGAAGGGAATGATTGATCCTCCAAAGCTAATGGAATGCATTAAGAAGAAAATGGGAAAAGAAGTTGAGATTTTGAATAATAAGAAAGATGGGAAACCAGAAGACAAATCAAACAACAACAAAGATTCAAATGAAGAGAAATTGGATAATTTTGCATTTAAATATCCTCCTCAATATTCTTTGCTTCATATTTACCCCAATCAAACTTTTAGTGATGACAATGTTTTTTCTTGTTCTATTATGTAA 726 32.78 KGQNQNGNKKQEEEKGKGKKEEQQKKIITEVVIKVYMHCEACQHKLSKCLKASSHGVEEVAADMENKKVVIKGKDLNPKKIMEEIKKKYSKNVELISPKDLPDTPKQNKPQPKKEEVQMKTVELKMNMHCEGCENDIKETIGKMEGVMRVETNRESSKVIVKGMIDPPKLMECIKKKMGKEVEILNNKKDGKPEDKSNNNKDSNEEKLDNFAFKYPPQYSLLHIYPNQTFSDDNVFSCSIM 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30417472 30418870 + MELO3C022329.2.1 Cme11g02338 343001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02338 241 MobiDBLite consensus disorder prediction 184 209 - -
Cme11g02338 241 Pfam Heavy-metal-associated domain 34 88 IPR006121 GO:0046872
Cme11g02338 241 Pfam Heavy-metal-associated domain 127 179 IPR006121 GO:0046872
Cme11g02338 241 ProSiteProfiles Heavy-metal-associated domain profile. 37 87 IPR006121 GO:0046872
Cme11g02338 241 MobiDBLite consensus disorder prediction 7 23 - -
Cme11g02338 241 MobiDBLite consensus disorder prediction 1 23 - -
Cme11g02338 241 SUPERFAMILY HMA, heavy metal-associated domain 29 87 IPR036163 GO:0046872
Cme11g02338 241 CDD HMA 37 75 IPR006121 GO:0046872
Cme11g02338 241 CDD HMA 128 183 IPR006121 GO:0046872
Cme11g02338 241 Gene3D - 25 101 - -
Cme11g02338 241 ProSiteProfiles Heavy-metal-associated domain profile. 127 176 IPR006121 GO:0046872
Cme11g02338 241 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 2 241 IPR044577 GO:0046872
Cme11g02338 241 Gene3D - 116 184 - -
Cme11g02338 241 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 8 2 241 - -
Cme11g02338 241 MobiDBLite consensus disorder prediction 96 116 - -
Cme11g02338 241 SUPERFAMILY HMA, heavy metal-associated domain 118 185 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02338 - - - csv:105435985 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02338 Cme-Chr11:30417472 Cme12g00385 Cme-Chr12:5482463 7.56E-21 dispersed
Cme11g01963 Cme-Chr11:27656134 Cme11g02338 Cme-Chr11:30417472 4.97E-14 transposed
Cme11g02338 Cme-Chr11:30417472 Cme12g01577 Cme-Chr12:23123894 9.17E-37 wgd
Cme11g02338 Cme-Chr11:30417472 Cme02g02079 Cme-Chr2:26699224 3.39E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1297 Blo01g00171 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00185 Cam06g0026 Cec06g0203 Cco06g0198 Clacu06g0202 Cmu06g0195 Cre06g0968 . . . . . . Chy11g01805 Cme11g02338 . . . . . . . . Sed07g0107 . . . . . . . . Bhi12g02426 Tan06g1492 Cmetu11g2271 . Hepe03g1138 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012885 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 27