Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02340 ATGGCAGACCAAAACAACAACAACAACAACAACAACAAGCATCACCCATTACTTCCTTCTCCTGCAACTTCTTCATCTCCATTAACAACACCTCCATTACCTACACCTTCTTCAGATATCAAAGACTTCACTCTCATTATTTCAAACAAAGATCAAAACAACAGCAACAGCAACAGCAACAACAACAACAAACAATTGGCTCCTAAACGTACCTCTAATAAAGACCGTCATAAAAAAGTCGATGGCCGTGGTCGTAGAATCCGTATGCCTGCTCTTTGTGCTGCTCGTGTCTTTCAATTAACTCGTGAATTGGGTCATAAAACTGATGGGGAGACCATTCAATGGCTTCTTCAACAAGCTGAGCCTTCTATTATTGCTGCCACTGGCTCCGGTACTATCCCCGCTTCTGCTCTTCATGCTGCTGGTGTTTCCCTTTCCGATCATGACTCCTCTGTTTCTGTCTCTGCTTCTTTAACCCCTAAAATCGAAGCGGTTCCCAGGACCAATTGGGCGATGATGGGTGCTAATTTGAGTAGATCTCACATGGCCACCCCGGGGTTTTGGCCCTCTTTAGGTGGGATTGGGACTGGATTTGTTAGTGAGAATCCGGGGTCGATTATGCCCAAGTTTGGGTTTCATGGGTTTGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTTCCGGGCATGATTGGGAATCAACATCAACAAATACCTGGGTTGGAGTTAGGGCTTTCGCAGGATGGGAATAATTTGAGAGGGATGTTGAATCCGCCTTCGTTTTCGCAAATTTATCATCAAATTGGCCAAAATCGTGAGTCCTCTGCACCCCCATTGGAGCAGGATCAAGCTCCTGAGAAAGATGATTCTCAAGAATCGAGATAA 885 44.86 MADQNNNNNNNNKHHPLLPSPATSSSPLTTPPLPTPSSDIKDFTLIISNKDQNNSNSNSNNNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIGNQHQQIPGLELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRESSAPPLEQDQAPEKDDSQESR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30437155 30440954 + MELO3C022331.2.1 Cme11g02340 343003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02340 294 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g02340 294 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Cme11g02340 294 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 294 IPR005333 GO:0003700
Cme11g02340 294 Pfam TCP family transcription factor 71 161 IPR017887 -
Cme11g02340 294 MobiDBLite consensus disorder prediction 1 86 - -
Cme11g02340 294 MobiDBLite consensus disorder prediction 266 294 - -
Cme11g02340 294 MobiDBLite consensus disorder prediction 35 68 - -
Cme11g02340 294 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 37 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02340 - - - cmo:103498864 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02340 Cme-Chr11:30437155 Cme12g02008 Cme-Chr12:25710988 4.59E-39 dispersed
Cme11g02340 Cme-Chr11:30437155 Cme06g01771 Cme-Chr6:20554511 6.25E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02231 . 45 265 TCP Transcription Factor Family AT5G23280 61.8 1.3e-63 240.0
Cme10g00786 . 93 315 TCP Transcription Factor Family AT5G23280 59.6 5.3e-60 228.0
Cme11g02537 . 65 328 TCP Transcription Factor Family AT2G45680 53.8 1.6e-65 246.9
Cme10g00425 . 71 165 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Cme12g02008 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Cme10g00701 . 46 165 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Cme10g00701 . 46 147 TCP Transcription Factor Family AT1G69690 78.8 2.8e-37 152.9
Cme06g01771 . 8 241 TCP Transcription Factor Family AT3G27010 58.2 2.8e-58 222.6
Cme11g02340 . 36 270 TCP Transcription Factor Family AT3G27010 52.0 3.5e-53 205.7
Cme10g00786 . 63 313 TCP Transcription Factor Family AT5G08330 55.4 9.9e-64 240.4
Cme06g02231 . 31 264 TCP Transcription Factor Family AT5G08330 59.1 1.3e-60 229.9
Cme02g01824 CCT 49 148 TCP Transcription Factor Family AT5G60970 76.2 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012904 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42260 PF03634 TCP 1.10E-30 No_clan Cme TF