Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02340 ATGGCAGACCAAAACAACAACAACAACAACAACAACAAGCATCACCCATTACTTCCTTCTCCTGCAACTTCTTCATCTCCATTAACAACACCTCCATTACCTACACCTTCTTCAGATATCAAAGACTTCACTCTCATTATTTCAAACAAAGATCAAAACAACAGCAACAGCAACAGCAACAACAACAACAAACAATTGGCTCCTAAACGTACCTCTAATAAAGACCGTCATAAAAAAGTCGATGGCCGTGGTCGTAGAATCCGTATGCCTGCTCTTTGTGCTGCTCGTGTCTTTCAATTAACTCGTGAATTGGGTCATAAAACTGATGGGGAGACCATTCAATGGCTTCTTCAACAAGCTGAGCCTTCTATTATTGCTGCCACTGGCTCCGGTACTATCCCCGCTTCTGCTCTTCATGCTGCTGGTGTTTCCCTTTCCGATCATGACTCCTCTGTTTCTGTCTCTGCTTCTTTAACCCCTAAAATCGAAGCGGTTCCCAGGACCAATTGGGCGATGATGGGTGCTAATTTGAGTAGATCTCACATGGCCACCCCGGGGTTTTGGCCCTCTTTAGGTGGGATTGGGACTGGATTTGTTAGTGAGAATCCGGGGTCGATTATGCCCAAGTTTGGGTTTCATGGGTTTGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTTCCGGGCATGATTGGGAATCAACATCAACAAATACCTGGGTTGGAGTTAGGGCTTTCGCAGGATGGGAATAATTTGAGAGGGATGTTGAATCCGCCTTCGTTTTCGCAAATTTATCATCAAATTGGCCAAAATCGTGAGTCCTCTGCACCCCCATTGGAGCAGGATCAAGCTCCTGAGAAAGATGATTCTCAAGAATCGAGATAA 885 44.86 MADQNNNNNNNNKHHPLLPSPATSSSPLTTPPLPTPSSDIKDFTLIISNKDQNNSNSNSNNNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIGNQHQQIPGLELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRESSAPPLEQDQAPEKDDSQESR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30437155 30440954 + MELO3C022331.2.1 Cme11g02340 343003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02340 294 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g02340 294 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Cme11g02340 294 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 294 IPR005333 GO:0003700
Cme11g02340 294 Pfam TCP family transcription factor 71 161 IPR017887 -
Cme11g02340 294 MobiDBLite consensus disorder prediction 1 86 - -
Cme11g02340 294 MobiDBLite consensus disorder prediction 266 294 - -
Cme11g02340 294 MobiDBLite consensus disorder prediction 35 68 - -
Cme11g02340 294 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 37 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02340 Cme-Chr11:30437155 Cme12g02008 Cme-Chr12:25710988 4.59E-39 dispersed
Cme11g02340 Cme-Chr11:30437155 Cme06g01771 Cme-Chr6:20554511 6.25E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42260 PF03634 TCP 1.10E-30 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02340 - - cmo:103498864 513.457