Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02343 AAGAAAGAAAGGAAAATAAGGAAAAAAGAAAAAGAAAAAACAATTGAGAGAGCTCTGAAGAGGCACCAAGAGACAGTGGAGAGAGGAGAAAAGGTCAGTTTCAAACCACAGAAAGAGAGAGAGAAGGCAACTTGGAAATCAGAATTCCCAAAGCCAAAGGTATCTCAGAGAAACTCGGAGGAGACATCCATTTCTTTTTTCCCTAAAAAAAACTCACTCACAAATCTCCACTACTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATGGATTGTTGGTCCCTTTCTCTCCCTCTCGACGACGAGTTCGAGAAGCTCGTCAATCGTATGAACCCTCCCAGGGTTACCATTGATAATGATTCCAGCAGAAAAGCTACTCTGATTAAGGTTGATAGTGCTAATAAGCGAGGGAGTTTACTGGAAGTGGTTCAGGTTCTTAATGATTTGAATCTCATAATTAGACGAGCTTACATTTCTTCTGACGGCGAATGGTTTATGGATGTGTTTCATGTAACGGATCAACATGGGAATAAGCTCTCTGAAAATGATGTTGCTGAGCGCATTCAACAGTCTCTTGGGCCAAGGGCTCGGAGCTTCAGGTCATTGAGGAGATCGGTTGGTGTTCAAGCTGCCGAGGAACATACAACCATTGAATTGACTGGAAGAGATAGGCCTGGTTTGCTCTCTGAGGTTTTTGCTGTTCTAGCAGACCTCAAATGCAATGTGGTAGCTGCAGAAGTTTGGACTCATAATTCAAGAATGGCTTCTGTTGTCTACATCACCGACGAGGCTACTGGGTTTTCAATCAGTGATCCTGATCGGCTTGGTAAGATAAAACAGCTTCTCCTCTTCGTATTAAAGGGGGATCGAGATAAGAGGAGTGCCAACACTGCTGTTTCGGTGGGTTCTACTCACAAGGAAAGGAGGCTGCACCAAATGATGTATGCAGACCGCGATTACGATCAAGATGATTTGGACTGTGGCTCGACAAGTGAGCGGAGAAAACCCCTTGTGACTGTCGAGAATTGTGCTGATAAGGGATATACCGTTGTGAACTTGAGGTCTCCCGACCGCCCAAAGTTGCTGTTTGATACAGTTTGCACACTAACAGACATGCAGTATGTTGTGTACCATGCTACGGTCATTGCTGAAGGACCAGAGGCTTCTCAGGAGTATTATATCCGTCATATGGATGGAAGTCCTATTAGTTCTGAAGCAGAGAGGCAAAGAGTAATCCATTGCTTAGAGGCTGCCATTCGAAGACGAACATCCGAGGGTATAAGATTAGAACTTTGCAGCGAGGACAGGGCTGGACTTCTTTCTGATGTAACTCGAATCTTTAGAGAAAACGGTCTTTCAGTCACTCGAGCTGAAGTTACCACACGAGGTACTCAAGCTGTTAATGTGTTCTATGTAACTGATGCATCTGGGAATCCAGTGAAGAGTGAGATGATTGAAGCAGTTCGAAAAGAGATCGGTCTCACAGTACTGTGTGTCAAAGACGACGAATTCTGCATGAAATCTCCATCGCCAGAAAGCAGTAGATTTTCGCTCGGTAATCTCTTTCGATCTAGATCAGAAAAGTTTCTTTACAACTTGGGGTTGATAAAGTCATGTTCTTGA 1629 43.77 KKERKIRKKEKEKTIERALKRHQETVERGEKVSFKPQKEREKATWKSEFPKPKVSQRNSEETSISFFPKKNSLTNLHYFPLLLLLLLLLLLMDCWSLSLPLDDEFEKLVNRMNPPRVTIDNDSSRKATLIKVDSANKRGSLLEVVQVLNDLNLIIRRAYISSDGEWFMDVFHVTDQHGNKLSENDVAERIQQSLGPRARSFRSLRRSVGVQAAEEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGFSISDPDRLGKIKQLLLFVLKGDRDKRSANTAVSVGSTHKERRLHQMMYADRDYDQDDLDCGSTSERRKPLVTVENCADKGYTVVNLRSPDRPKLLFDTVCTLTDMQYVVYHATVIAEGPEASQEYYIRHMDGSPISSEAERQRVIHCLEAAIRRRTSEGIRLELCSEDRAGLLSDVTRIFRENGLSVTRAEVTTRGTQAVNVFYVTDASGNPVKSEMIEAVRKEIGLTVLCVKDDEFCMKSPSPESSRFSLGNLFRSRSEKFLYNLGLIKSCS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30456839 30459639 + MELO3C022334.2.1 Cme11g02343 343006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02343 542 MobiDBLite consensus disorder prediction 9 48 - -
Cme11g02343 542 SUPERFAMILY ACT-like 214 285 IPR045865 -
Cme11g02343 542 PANTHER OS08G0515400 PROTEIN 92 540 - -
Cme11g02343 542 SUPERFAMILY ACT-like 125 196 IPR045865 -
Cme11g02343 542 Coils Coil 8 28 - -
Cme11g02343 542 SUPERFAMILY ACT-like 426 494 IPR045865 -
Cme11g02343 542 ProSiteProfiles ACT domain profile. 430 509 IPR002912 -
Cme11g02343 542 MobiDBLite consensus disorder prediction 1 56 - -
Cme11g02343 542 ProSiteProfiles ACT domain profile. 129 209 IPR002912 -
Cme11g02343 542 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 92 540 IPR040217 -
Cme11g02343 542 Gene3D - 216 286 - -
Cme11g02343 542 Gene3D - 427 503 - -
Cme11g02343 542 ProSiteProfiles ACT domain profile. 218 295 IPR002912 -
Cme11g02343 542 Pfam ACT domain 431 492 IPR002912 -
Cme11g02343 542 Pfam ACT domain 217 265 IPR002912 -
Cme11g02343 542 CDD ACT_ACR_3 350 424 - -
Cme11g02343 542 CDD ACT_ACR_4 428 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02343 - - - csv:101218687 867.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01921 Cme11g02343 CCT
Cme07g01921 Cme11g02343 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01451 Cme-Chr1:18827294 Cme11g02343 Cme-Chr11:30456839 2.34E-40 dispersed
Cme07g01921 Cme-Chr7:24424930 Cme11g02343 Cme-Chr11:30456839 0 dispersed
Cme08g00667 Cme-Chr8:4353117 Cme11g02343 Cme-Chr11:30456839 2.23E-135 dispersed
Cme09g01676 Cme-Chr9:21453658 Cme11g02343 Cme-Chr11:30456839 1.42E-146 dispersed
Cme12g01320 Cme-Chr12:21253267 Cme11g02343 Cme-Chr11:30456839 1.12E-06 dispersed
Cme11g02343 Cme-Chr11:30456839 Cme06g02643 Cme-Chr6:33588844 2.52E-164 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1301 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00179 Cam06g0032 Cec06g0198 Cco06g0193 Clacu06g0195 Cmu06g0189 Cre06g0961 . . . . . Csa04g00296 Chy11g01810 Cme11g02343 . Blo12g00284 . . . . . . Sed12g0612 . . . . . . Cpe17g00924 Cpe03g01219 Bhi12g02421 Tan06g1481 Cmetu07g0215 . . . . . . . . . . . Lsi09g01746 . Chy07g01484 Cme07g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001695 2 3 2 3 2 2 3 2 2 2 2 2 3 3 2 3 2 2 3 2 1 2 2 2 2 2 2 6 3 1 70