Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02345 GAAGAAATCACATTTACTTGGTTAGTTGATTTAGCTGTTCTGACCACCCAAAACGCAAACCCTTCCCTTAGCCTTTTTCCTTCTCTCTCACACACACAGCTTCTCTCTTTCTCTTCTTTCTCTCTCCTATTCTTCTTCTTCTTCTTCTTCTTTCTCTGCAACAGTTTCACCATTCTCCCCAAACCCCTAGATTTTCTCATACAATCCCTTCTCTTCTCTTCAGCTTCTCTCTGCAAATCACTTCTTCCCCAAACCCCCAATCCTGCCTTTCCTTTCGATCTCCCACTCTTATTCATCCGCCCACCCCCCCTCATGGCCGACGGCAAGTTCGATCTCCCCGACGATCTTCTTTCCTCTCGCCCTTCTGATCACTCCTGGACCCCCAAAGCTTCTGGAGGGAATGATGAGGAGAAGGTGCTCTCGGGTTTCCTTGATGAGTCTAAAGACTCTGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGGAAGTGCGTGCTCCAACACCAGTATCTCTTGCTAACTCAACTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCTGAGGACAAGAAGGATTGGAGGAAGAGTACATCTGAAAATGAAAGTGGCCGCCGTTGGAGAGAGGAAGAGCGAGAAACTGGCTTACTTAGTGGTCGCCGCAGGAAAACTGAGAGACGCATGGATAACATGTCAACTAAGGAGACATTGGAGGGTAGAGTCCTCCCTAATTCGGACAGATGGCACGATGGTCGCACTTCTGGGCATGATAGTCGCACTTCTGGTCATGACAGTCGTACTTCTGGACATGATAACCGTACTTCTGGGCATGACAGTCGTACTTCTAGTCATGATGCACGGCGTGACAACAAATGGACGTTGAGATGGGGGCCCGATGACAAAGAAAAGGAATCACGGATGGACAAGCGATCAGATGCTGATAAGGAAGATGTTCGCAGTGACAGTCAATCAGTGAGTAGTAATCGCCCTGCTTCTGAGCGTGAATCTGAATCGCGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGCTGGCGCAACTTCCTTTCGTGCTGCACCCGGATTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTGGGATTTACAATTGGAAGAGGAAGAGGAAATACCATTGGGAGATCGTCTACTGGTCTCATTGGAGTACCACACTTGGATAAGATTGAAAATGTTCCTGGGAAACCAAGATACTCATCTCATGCTTTTTGTTACCCTAGGGGTAAGCTTCTCGACATATATAGGAGGCAGAAATCTGATCCATCGTTCTCGGATATGCCTGATGATATGGAAGAATTGCAGCCTTTGACTCAACCTAGTGTTGTAGAACCATTGGCTTTTGTTTCTCCGGATGCTGAAGAGGAGAGTACCCTTGGTGACATATGGAAGGGGAAAATCACCAGTAGCGGGGTTGTTTACAATTCACATACGAAGGGGAAGCCTACTGAATCTGTTTTAGGAGATGTAGACTCCATAGATGGATATCAGGCTGCGCTGGATTTGACTTTAGAGTCCGAGAATATAGCAGAAACTCCAATTGAAGATATTTCTGATGTGGGTCATGAAGTTACAAATGATGAAGCATTCCAAGATGCCATTGACGGGAGCATTTGGAGTCATCCTTCAATGAGAGATGTCCTAGATGGAAAATATGTGAGCCATAAGGAAGAGGAAATAAGGTCTAGTGCCATTTCTATGCCAGACTCTCGTGGATTGGCCCACACAGTTTCTACAGCAGCCTCGCTACGTGTGATGGAGATTGGCAGTGGGCTACCTGGTACTCAGCTAAATGCAGATTCTGATCATAAAAGGCCTCAGAACTTTGATGAAATTGAGTTTGCCAATTCGTTTGATGTCAAATCCAAGCTTTCTGATGATCCTAGTTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAACAGAAGTTCTGATGTGAAATCTGAGGAGCTGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCTTTTATTGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTAGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTTTGTGAGTTGGGGGAGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATGGGAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATAGAGACCAGTTTACCTTCTAAGCATCCGGCACTTGATATGAATGATGCGTCTACAACAAATGAGGTTCATCGAACACTCGCTGAATTACGTAGCCTGTCCAATCAACACATAGCATCTGGAATGTCTGAAGCTGAAGCACCATTTCAATTGCATGCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGTTACCAATTTCCCAACTCTCCTGGGGTGCTGCCTATGGTGAATTCTATCAGCCAGCCTTCTCTTTTGAATGAGTTAAGTGATCGCAGCCTGCCTGTTCAGAATGAAAATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGTTGGAAGGTACAAATATGAAACCAGTTGAAGTCACAAATTCGAAACATACCAAGTCAGTTAATAACATGCCTTCAAGTATGGTAAGAACCACATCGTTAGTTGGGAAGCCGGAAGTACCTCTTAATGCAGAGACTTGGCTTGATGTATACAGAAGAAGTATGCATTCTGACCAGGGTGTATACCAGGAGGCCAATGTTGCTCATTCCTTGCCACATATAGAACAAGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCCCACCAATATCATCAGGCACTTCAACAGCGGAATTTATTGTCTCACACTAACGAAGCTACTTTAGATCATCATATGCAACAACAGAATCTTATTCACCAGCAGCAGCTGTTGGCTAATAGAAGTACACCCGATCTTGATCATTTCTTGAACCTGCAGATGCAACAGCAACAACAACGGCAGCTGCAGTTACAGCATCAGTTACAGCAGCAGCAGTTGCAGCAGCAGCAAAAGCTTTTGCAGGAACAACATCAGTCTCAAGTCCAGCAGGCACTGCTTGAACAGTTGTTGCGTCGACAAATGCATGATTCGGGCCTTGGGCAGTCACGTATTGATCCAATTAGAGCCAATAATGCTCTTGATCAGGTGTTAATGGAGCAACATCTTTTACATGAGCTACAGCAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTCGAGCAGCTTATCAAAGCAAAGTTTGGTCACTTGCCACCACACCAAGAACAAAGAGATTTGTCTGAATTATTATCTCGGGTTCAGCATGGGCACATTCAATCATTGGATAATCAACTTGCCCACCAGGATGTGCTACAGTCGAGACAATTGTCTATGGCATTAAGGCAGAGGGCCAGTATGGAGGACAAGAGACATGTTTGTGGTCCTATCTGGCCAGAGGATGAGGCCGATCAGCAGTTTTTCAGAGGACATGCTGGCACACAACGTTTACCAACGTCAGGATTTGAATTATACCAGCATCAACAGAGGCAAGCTCATGCAGACCAGTTGAATCACCTTGAGCACAACCTTTCCTTTCAAGATCGGTTTAGGCTAGGTCTTTATGAGCCTGCTTCACTTCCACTCGAGAGATCAATATCCTATCCTGACGTTGCTCAGGGGATGAATCTGGATGTAGTTAATGCTATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCCAGTGCACATAATCCACCTGGCGGTCAACTGGTGGGGCAATATGCACCTGGTGCCATTCCACAGAATCATCATCACTCTCTAGTCAGTAACCAGTTTCATGTTTCACATTTCGATGGAGCTGAAGGCAACTGGTCTGAGAAAAATGAGCGACTTGGAAATGAATGGATGGAGTCTCGGATTCAACAAAGGCATATCAATATCAACGCTGAGCAACAGAAAAGGGAGTTGGAGGCTAAAATGATTTCTGAGGATCCAACTTTATGGATGTCAGATGGACTTAATGATGAGAAGTCAAAGCAGTTATTAATGGACCTACTCAATCAGAAATCTGTTCATCAACCCACAGAACCCCTGGATGTAGGAAGTGGAGCATCTTTCAATAGAGGATCATCTGGCCTCTATTCTGGATCAGGCTCTCTTGAACAGTCGTTCGTTCTTCATTCAGGCAAGGAAAGAGGTATGAACAACACATTGCCAGTGGGGTCTTATGGTTCTAATGCTTATGAACCACTGCAAGATGAGCATCCTGGCAACTTGAGCTTGACAAGCAATGAGAAGGTCCCATACAGGTCGGATTCTGTATCTGCTGTCAAGGGAGCATCGATTTTGTCTGGTCTTAAAGCCAATGGTTCAATTAACAGCTCTAGTTCTAGCATGGCTACCGCTGGTAACCTTTCTATGACTAGAGACGTCTTGGAGGTGGAGGGTAGGGCACGAGGATTGAAAGGTGAGGGTTTGGTGAAAACTCAAGCCTTTCAAATTCAAGAAAGCATGCTTGACCTAGTAGCATCTGGTGATCGTGGGGAATTTGCAATGGATACTCATACCCTTAGTCGGCATTCGTCTCTTGGTTCTGCTGGCTTTCACAATGAAAAAATTGCTAATACGTTTCCAGAAGAGGTTGCTAAAGACCCGGTGACCATTCACAACAAAGATAGTACTTCGTTGAAACGCCCTCCTGTCTCACGCACTTCGGCATCCCAGGATGGATTGTCTGTCCTGATTCCTGATCCGGTTGTTAGAGGAAAGAACTCAGATGGTGGAAGACCGGACCCAACTAGTATCTTGGTGAACCAAGAAAACATGGCAGCCATGAAGAAAGAGATGCGTTTCCGGCGCTCTTCTTCTTGTAGTGACAGCGACGTGTCAGAGACTTCTTTTATCGATATGCTGAAGAAGACAGCTCCACAAGAATCCCATTTGACAACGGCGGGAGTTCCAGAGCCATCTGATGGAATGCAGGGAGGGAAAGGTGGGAAAAAGAAAGGGAAGAAGGGGAGACAGATAGATCCCGCACTACTCGGATTCAAAGTCACCAGCAACCGAATTATGATGGGTGAAATCCAACGCTTAGACGATTGA 5220 45.59 EEITFTWLVDLAVLTTQNANPSLSLFPSLSHTQLLSFSSFSLLFFFFFFFFLCNSFTILPKPLDFLIQSLLFSSASLCKSLLPQTPNPAFPFDLPLLFIRPPPLMADGKFDLPDDLLSSRPSDHSWTPKASGGNDEEKVLSGFLDESKDSVASENSIPLSPQWLYAKPSETKEVRAPTPVSLANSTDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLSGRRRKTERRMDNMSTKETLEGRVLPNSDRWHDGRTSGHDSRTSGHDSRTSGHDNRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMDKRSDADKEDVRSDSQSVSSNRPASERESESRDKWRPRHRMESHSAGATSFRAAPGFSLERGRGDGGSNLGFTIGRGRGNTIGRSSTGLIGVPHLDKIENVPGKPRYSSHAFCYPRGKLLDIYRRQKSDPSFSDMPDDMEELQPLTQPSVVEPLAFVSPDAEEESTLGDIWKGKITSSGVVYNSHTKGKPTESVLGDVDSIDGYQAALDLTLESENIAETPIEDISDVGHEVTNDEAFQDAIDGSIWSHPSMRDVLDGKYVSHKEEEIRSSAISMPDSRGLAHTVSTAASLRVMEIGSGLPGTQLNADSDHKRPQNFDEIEFANSFDVKSKLSDDPSSIFFIPFSEQNPNRSSDVKSEELSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADGKSLSGQSGASGGIIETSLPSKHPALDMNDASTTNEVHRTLAELRSLSNQHIASGMSEAEAPFQLHAKGQSFHDVVAQDEEIVFSGRPGNDGYQFPNSPGVLPMVNSISQPSLLNELSDRSLPVQNENKLHPFGLLWSELEGTNMKPVEVTNSKHTKSVNNMPSSMVRTTSLVGKPEVPLNAETWLDVYRRSMHSDQGVYQEANVAHSLPHIEQESNRFDLADQLMSHQYHQALQQRNLLSHTNEATLDHHMQQQNLIHQQQLLANRSTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQALLEQLLRRQMHDSGLGQSRIDPIRANNALDQVLMEQHLLHELQQQQSHHQQRSVDPSFEQLIKAKFGHLPPHQEQRDLSELLSRVQHGHIQSLDNQLAHQDVLQSRQLSMALRQRASMEDKRHVCGPIWPEDEADQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLEHNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNPPGGQLVGQYAPGAIPQNHHHSLVSNQFHVSHFDGAEGNWSEKNERLGNEWMESRIQQRHININAEQQKRELEAKMISEDPTLWMSDGLNDEKSKQLLMDLLNQKSVHQPTEPLDVGSGASFNRGSSGLYSGSGSLEQSFVLHSGKERGMNNTLPVGSYGSNAYEPLQDEHPGNLSLTSNEKVPYRSDSVSAVKGASILSGLKANGSINSSSSSMATAGNLSMTRDVLEVEGRARGLKGEGLVKTQAFQIQESMLDLVASGDRGEFAMDTHTLSRHSSLGSAGFHNEKIANTFPEEVAKDPVTIHNKDSTSLKRPPVSRTSASQDGLSVLIPDPVVRGKNSDGGRPDPTSILVNQENMAAMKKEMRFRRSSSCSDSDVSETSFIDMLKKTAPQESHLTTAGVPEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30469128 30478265 - MELO3C022336.2.1 Cme11g02345 343008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02345 1739 ProSiteProfiles GYF domain profile. 677 727 IPR003169 GO:0005515
Cme11g02345 1739 MobiDBLite consensus disorder prediction 1598 1615 - -
Cme11g02345 1739 PANTHER GYF DOMAIN-CONTAINING PROTEIN 105 1739 - -
Cme11g02345 1739 Coils Coil 1022 1044 - -
Cme11g02345 1739 SUPERFAMILY GYF domain 674 733 IPR035445 -
Cme11g02345 1739 Pfam GYF domain 681 718 IPR003169 GO:0005515
Cme11g02345 1739 MobiDBLite consensus disorder prediction 1681 1714 - -
Cme11g02345 1739 MobiDBLite consensus disorder prediction 170 382 - -
Cme11g02345 1739 MobiDBLite consensus disorder prediction 1596 1615 - -
Cme11g02345 1739 PANTHER GYF DOMAIN-CONTAINING PROTEIN 105 1739 - -
Cme11g02345 1739 SMART gyf_5 678 732 IPR003169 GO:0005515
Cme11g02345 1739 CDD GYF 677 734 IPR003169 GO:0005515
Cme11g02345 1739 MobiDBLite consensus disorder prediction 193 333 - -
Cme11g02345 1739 MobiDBLite consensus disorder prediction 343 363 - -
Cme11g02345 1739 MobiDBLite consensus disorder prediction 1622 1641 - -
Cme11g02345 1739 MobiDBLite consensus disorder prediction 178 192 - -
Cme11g02345 1739 Gene3D - 664 744 IPR035445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02345 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - csv:101204211 2939.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01966 Cme-Chr3:27560281 Cme11g02345 Cme-Chr11:30469128 2.50E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44