Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02350 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCAAACATTGCCAAGTTGCCTTCTGGAATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGACGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTTCGTGAGCTTGCAACAGCTACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTTGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTCCTAGTGGAAGTTCTCATGCTTAGCCTTCTGCATCATCCAAATCTGGTGAATCTGATTGGTTATTGTGCTGATGGGGATCAACGACTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGACCACCTTCACGAAATTCCACCTGAGAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCTTCCAATATATTACTTGATGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACATATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTAACTGTCAAATCTGATGTTTATAGTTTCGGTGTTGTCTTCTTAGAGTTGATTACTGGAAGGAGAGCCATTGATAGCACCCGACCCCAAGGAGAACAGAATCTTGTCACATGGGCACGACCGTTTTTTAACGATCGCAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCGATGAGAGGTCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCCGCCCGTCCGCTCATTGGAGATGTGGTTACTGCCCTGTCTTATTTAGCAAATCAATCATACGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTGGTACTGCCGCTCAGAGAGGTTCTGGTGACCGGGATGAAAGACGGAACAGAGACGAGAAAGGTGGAGGAGGGATGGTAAAGAATGAAGAAGGGGGAGCTTCTGGACGAAGGTGGCCATTGGATGGTCCCGAGAAGGATGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCAGTTGCCGAGGCCAAGATGTGGGGAGAAAATTGGCGAGAAAAACGACGGCAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATAA | 1413 | 46.43 | MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPTPLVNISAQTFTFRELATATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPEKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAGTAAQRGSGDRDERRNRDEKGGGGMVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30503519 | 30509090 | + | MELO3C022340.2.1 | Cme11g02350 | 343013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02350 | 470 | PANTHER | OS07G0668900 PROTEIN | 1 | 465 | - | - | |
Cme11g02350 | 470 | MobiDBLite | consensus disorder prediction | 416 | 461 | - | - | |
Cme11g02350 | 470 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cme11g02350 | 470 | SUPERFAMILY | Protein kinase-like (PK-like) | 59 | 357 | IPR011009 | - | |
Cme11g02350 | 470 | MobiDBLite | consensus disorder prediction | 365 | 470 | - | - | |
Cme11g02350 | 470 | ProSiteProfiles | Protein kinase domain profile. | 83 | 360 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g02350 | 470 | ProSitePatterns | Protein kinases ATP-binding region signature. | 89 | 112 | IPR017441 | GO:0005524 | |
Cme11g02350 | 470 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Cme11g02350 | 470 | MobiDBLite | consensus disorder prediction | 384 | 402 | - | - | |
Cme11g02350 | 470 | CDD | STKc_IRAK | 89 | 357 | - | - | |
Cme11g02350 | 470 | Pfam | Protein kinase domain | 88 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g02350 | 470 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBS1 | 1 | 465 | - | - | |
Cme11g02350 | 470 | Gene3D | Transferase(Phosphotransferase) domain 1 | 160 | 372 | - | - | |
Cme11g02350 | 470 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 206 | 218 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g02350 | 470 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 159 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01744 | Cme-Chr1:24422995 | Cme11g02350 | Cme-Chr11:30503519 | 6.42E-174 | dispersed | |
Cme02g00246 | Cme-Chr2:2012503 | Cme11g02350 | Cme-Chr11:30503519 | 1.73E-106 | dispersed | |
Cme02g00954 | Cme-Chr2:13817271 | Cme11g02350 | Cme-Chr11:30503519 | 5.40E-157 | dispersed | |
Cme06g02265 | Cme-Chr6:29655336 | Cme11g02350 | Cme-Chr11:30503519 | 9.06E-180 | dispersed | |
Cme07g02090 | Cme-Chr7:25650633 | Cme11g02350 | Cme-Chr11:30503519 | 6.93E-105 | dispersed | |
Cme10g00828 | Cme-Chr10:5472250 | Cme11g02350 | Cme-Chr11:30503519 | 0 | dispersed | |
Cme11g02350 | Cme-Chr11:30503519 | Cme12g00287 | Cme-Chr12:3527094 | 7.88E-178 | dispersed | |
Cme11g02350 | Cme-Chr11:30503519 | Cme06g00702 | Cme-Chr6:4544201 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65284 | PF00069 | Pkinase | 1.70E-45 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02350 | K13430 | - | csv:101219880 | 933.324 |