Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02350 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCAAACATTGCCAAGTTGCCTTCTGGAATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGACGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTTCGTGAGCTTGCAACAGCTACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTTGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTCCTAGTGGAAGTTCTCATGCTTAGCCTTCTGCATCATCCAAATCTGGTGAATCTGATTGGTTATTGTGCTGATGGGGATCAACGACTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGACCACCTTCACGAAATTCCACCTGAGAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCTTCCAATATATTACTTGATGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACATATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTAACTGTCAAATCTGATGTTTATAGTTTCGGTGTTGTCTTCTTAGAGTTGATTACTGGAAGGAGAGCCATTGATAGCACCCGACCCCAAGGAGAACAGAATCTTGTCACATGGGCACGACCGTTTTTTAACGATCGCAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCGATGAGAGGTCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCCGCCCGTCCGCTCATTGGAGATGTGGTTACTGCCCTGTCTTATTTAGCAAATCAATCATACGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTGGTACTGCCGCTCAGAGAGGTTCTGGTGACCGGGATGAAAGACGGAACAGAGACGAGAAAGGTGGAGGAGGGATGGTAAAGAATGAAGAAGGGGGAGCTTCTGGACGAAGGTGGCCATTGGATGGTCCCGAGAAGGATGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCAGTTGCCGAGGCCAAGATGTGGGGAGAAAATTGGCGAGAAAAACGACGGCAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATAA 1413 46.43 MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPTPLVNISAQTFTFRELATATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPEKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAGTAAQRGSGDRDERRNRDEKGGGGMVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30503519 30509090 + MELO3C022340.2.1 Cme11g02350 343013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02350 470 PANTHER OS07G0668900 PROTEIN 1 465 - -
Cme11g02350 470 MobiDBLite consensus disorder prediction 416 461 - -
Cme11g02350 470 MobiDBLite consensus disorder prediction 1 60 - -
Cme11g02350 470 SUPERFAMILY Protein kinase-like (PK-like) 59 357 IPR011009 -
Cme11g02350 470 MobiDBLite consensus disorder prediction 365 470 - -
Cme11g02350 470 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02350 470 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Cme11g02350 470 MobiDBLite consensus disorder prediction 7 27 - -
Cme11g02350 470 MobiDBLite consensus disorder prediction 384 402 - -
Cme11g02350 470 CDD STKc_IRAK 89 357 - -
Cme11g02350 470 Pfam Protein kinase domain 88 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02350 470 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 465 - -
Cme11g02350 470 Gene3D Transferase(Phosphotransferase) domain 1 160 372 - -
Cme11g02350 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cme11g02350 470 Gene3D Phosphorylase Kinase; domain 1 44 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01744 Cme-Chr1:24422995 Cme11g02350 Cme-Chr11:30503519 6.42E-174 dispersed
Cme02g00246 Cme-Chr2:2012503 Cme11g02350 Cme-Chr11:30503519 1.73E-106 dispersed
Cme02g00954 Cme-Chr2:13817271 Cme11g02350 Cme-Chr11:30503519 5.40E-157 dispersed
Cme06g02265 Cme-Chr6:29655336 Cme11g02350 Cme-Chr11:30503519 9.06E-180 dispersed
Cme07g02090 Cme-Chr7:25650633 Cme11g02350 Cme-Chr11:30503519 6.93E-105 dispersed
Cme10g00828 Cme-Chr10:5472250 Cme11g02350 Cme-Chr11:30503519 0 dispersed
Cme11g02350 Cme-Chr11:30503519 Cme12g00287 Cme-Chr12:3527094 7.88E-178 dispersed
Cme11g02350 Cme-Chr11:30503519 Cme06g00702 Cme-Chr6:4544201 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65284 PF00069 Pkinase 1.70E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02350 K13430 - csv:101219880 933.324