Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02358 ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACCCCATTTTTGGCGATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACCACCATCAGGTCAAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA 405 49.63 MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30581299 30583699 - MELO3C022346.2.1 Cme11g02358 343021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02358 134 PANTHER BNAC09G43880D PROTEIN 3 126 - -
Cme11g02358 134 Pfam LITAF-like zinc ribbon domain 46 110 IPR006629 -
Cme11g02358 134 ProSiteProfiles LITAF domain profile. 33 113 IPR006629 -
Cme11g02358 134 PANTHER LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR 3 126 IPR037519 -
Cme11g02358 134 SMART litaf 48 113 IPR006629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02358 K19363 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor - csv:101221688 293.508
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01823 Cme11g02358 . . . . . . . . Sed07g0128 . . . . . . Cpe17g00936 . Bhi12g02399 Tan06g1453 Cmetu11g2573 . . . . . . . . . . . Lsi09g01760 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009739 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33