Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02359 ATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAATCTTTCCGTAACTTCTCCCTCAACCACCGTCTATCCTCTGCCGCCCCCTCTTCCGCCGGAGTGCGGAGATCACCGTCTTCATTTTCTTCCTCTTCTTCCTCCTCCGATGACGAACCTCATCTTCCTCTTCATCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCTTTCTGGGAGCAATGCCTCGATTTGAAGACAGGGGAAGTTTACTATAGAAACTGCCGAACCGGAATGAAGGTAAAAGAAGATCCGAGGACAGCCGTAGCACACAGCCGAGATTTATATTCGGAAGACGACGGGGAGGACGGTGATGAGAGTTCTTCAGACGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCGTACGGTGGTAGTAGACAGCAATATCCGGCGGAAAACGTGGAGGATGTACTGGTAGTAGCTGGATGCAAGAGATGCTTCATGTATTTCATGGTGCCGAAACAGGTTGAAGATTGTCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGAGAGTAATGGGTTCCCATGA 606 50.0 MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPSSAGVRRSPSSFSSSSSSSDDEPHLPLHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYSEDDGEDGDESSSDGGSEESCSSSSYGGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDESNGFP 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30587578 30589219 + MELO3C022347.2.1 Cme11g02359 343022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02359 201 MobiDBLite consensus disorder prediction 105 119 - -
Cme11g02359 201 PANTHER BNAA04G19570D PROTEIN 36 195 - -
Cme11g02359 201 PANTHER BOMB/KIRA PROTEINS 36 195 - -
Cme11g02359 201 MobiDBLite consensus disorder prediction 132 149 - -
Cme11g02359 201 SUPERFAMILY WW domain 72 109 IPR036020 GO:0005515
Cme11g02359 201 MobiDBLite consensus disorder prediction 105 149 - -
Cme11g02359 201 Gene3D - 75 112 - -
Cme11g02359 201 MobiDBLite consensus disorder prediction 28 58 - -
Cme11g02359 201 MobiDBLite consensus disorder prediction 28 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02359 - - - csv:101221916 318.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01971 Cme11g02359 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01971 Cme-Chr7:24850814 Cme11g02359 Cme-Chr11:30587578 8.37E-22 dispersed
Cme11g02359 Cme-Chr11:30587578 Cme04g00162 Cme-Chr4:1237434 1.27E-07 dispersed
Cme11g02359 Cme-Chr11:30587578 Cme04g02354 Cme-Chr4:30388647 1.00E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1329 Blo01g00160 . . Bda11g00377 Bpe13g00824 . . . . . . . . . . . . . . . . . . . Cla06g00164 Cam06g0049 Cec06g0183 Cco06g0176 Clacu06g0177 Cmu06g0172 Cre06g0946 . . . . . . Chy11g01824 Cme11g02359 . Blo12g00291 . Bda11g00377 . . . Bma06g01333 Sed07g0129 . . . . . . Cpe17g00937 . Bhi12g02398 Tan06g1452 Cmetu11g1288 . . . . . . . . . . . Lsi09g01761 . Chy07g01527 Cme07g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001835 4 2 2 3 3 2 4 2 2 2 2 2 2 2 2 3 2 2 4 2 2 2 2 2 2 2 2 2 2 1 68