Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02367 ATGGCTTTGCAGCAGCTTAGCCTTGGCCCAACTCCTGTTGACGGCGTCACTAATGGCGTTGACGTCCGGCCGATGTCAACTGACGGCGGAGACGACGGAAGCAAAACCCCCAGGCTTCCGCGCTGGACCCGCCAGGAGATTCTCGTCCTCATACAAGGGAAGAAAGTTGCAGAGACAAGGGTTCGCGGTGGCCGAGCTGCTAGTCTCGCCTTTGGTTCTGGTCAGGTAGAACCAAAGTGGGCTTCGGTTTCTTCTTACTGTAAGAGACATGGAGTTAATCGAGGTCCGGTTCAGTGTCGGAAGAGATGGAGTAATTTGGCCGGTGATTTCAAGAAGATCAAGGAGTGGGAATCCCAAATTAGGGAAGATACTGAATCCTTTTGGGTTATGAGAAACGATTTGAGACGTGAGAGGAAATTGCCAGGGTTTTTCGATAGAGAGGTTTATGATATTTTGGATTCCGGTTCTGCTCCTTCGCCTTCCCCTCCTCTTGCGCTTGCTCTTACTCCTGTTCCTATTCCTGTTCCACCTCACGCTCTTAATTCTGACGACGGAAAACCCGACGCTGAGCCAGAACACGTCTTCGACAGTTCTAAAACTGCCGCGGCTGATGATGGTTTGTTTTCCGATTTCGAGCAGGATGAAACTAGTCGGAGCCCCTTGAAGGAAGTAGCGGGGAAGGATGTTCCACCACCGACGGCTGATGGGGGAATTCCTGCTCCGACGCCTTTATCAGAGACTCTGTACCGACCTCCTGGTCACGATTGTCCTGACCAAGGAACAACAAATGAAAAAGAAGCAGCAGCAAATCCCGAGATAGGATCAACGTCGTCACAAGAGGGAAGGAAACGAAAGCGAGTTGCATTAGATGGGGACGAAGAAACCATCCTACAGGATGAATTGATTGGGATCCTTGAAAAGAATGGGAAACTACTGACTGCCCAACTTGAAGCTCAAAACATGAACTTCCAGCTAGACCGAGAGCAGCGAAAGCATCACGCCGATGGCTTAGTCGCAGTTCTTAACAAGCTCGCAGACGCTCTAGGACGAATCGCGGATAAGCTGTAG 1068 50.75 MALQQLSLGPTPVDGVTNGVDVRPMSTDGGDDGSKTPRLPRWTRQEILVLIQGKKVAETRVRGGRAASLAFGSGQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLRRERKLPGFFDREVYDILDSGSAPSPSPPLALALTPVPIPVPPHALNSDDGKPDAEPEHVFDSSKTAAADDGLFSDFEQDETSRSPLKEVAGKDVPPPTADGGIPAPTPLSETLYRPPGHDCPDQGTTNEKEAAANPEIGSTSSQEGRKRKRVALDGDEETILQDELIGILEKNGKLLTAQLEAQNMNFQLDREQRKHHADGLVAVLNKLADALGRIADKL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30650125 30652863 - MELO3C022356.2.1 Cme11g02367 343030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02367 355 MobiDBLite consensus disorder prediction 183 199 - -
Cme11g02367 355 Gene3D - 42 112 - -
Cme11g02367 355 MobiDBLite consensus disorder prediction 1 38 - -
Cme11g02367 355 Pfam Myb/SANT-like DNA-binding domain 41 130 IPR044822 -
Cme11g02367 355 ProSiteProfiles Myb-like domain profile. 41 107 IPR001005 -
Cme11g02367 355 MobiDBLite consensus disorder prediction 175 287 - -
Cme11g02367 355 MobiDBLite consensus disorder prediction 263 277 - -
Cme11g02367 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 18 355 - -
Cme11g02367 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 18 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02367 - - - csv:101222632 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00318 Cme-Chr4:2493520 Cme11g02367 Cme-Chr11:30650125 7.77E-10 dispersed
Cme10g01180 Cme-Chr10:11851125 Cme11g02367 Cme-Chr11:30650125 1.30E-15 dispersed
Cme11g02367 Cme-Chr11:30650125 Cme09g01908 Cme-Chr9:23225738 1.73E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1344 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00158 Cam06g0057 Cec06g0175 Cco06g0169 Clacu06g0169 Cmu06g0165 Cre06g0940 . . . . . . Chy11g01831 Cme11g02367 . Blo12g00294 . . . . . . Sed06g0273 . . . . . . Cpe17g00943 . Bhi12g02389 Tan06g1441 Cmetu10g1400 . Hepe03g1174 . . . . . . . . . Lsi09g01768 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005043 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42263 PF13837 Myb_DNA-bind_4 5.50E-11 CL0123 Cme TF