Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02368 ATGCCGTCTGAAGTTTTGGACTTGAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACGTCATACAGATGAGGGGCAGGTTGGAGTTTGGAAGTCAGCTAGTGTGCCAAATCACCGTGCCAGTAACATATCAGGTTCTTCATCATCTGTGGAAAAATTTTCAATAGGTGAGTGCCTGCCCAAGAACTCCCTGGAAAGTCATGATTCATTTCCTGTGAGAGACCAGAATGCAAGTCTTATACTGAATAGACATGCTGTTGGAGCTGAAAGAACATCCAATTATTTTTCTCGAAGTAATGAAGTTAATATGATGAATTCTCAGTATGAGAGCAGTCTTTTCTCGAGTTCTTTATCAGATATATTTACTAGGAAGTTGCGCTTTTCTCCGAGCAATGCTCTATATGGCCATTCTGTTGATACTGTTGCATCTCACTTTGAGGAGGAGGAAGTTTTTGAGTCACTTGAAGAATTGGAGGCTCAAACCATCGGAAACCTCCTCCCTGACGATGATGACTTACTGGCAGGAGTAACTGATGGGCTTGATTGTTTGGTTGAAACTACTGGCGAGGATGATGCTGAGGACTTAGATTTTTTTAGCAATGTTGGTGGGATGGATTTGGGTGATGATGGTTTATCTGTGGGACAGAAGAATTCTGAATCTCCTGGACTTTTTAACAATTTGCCGGGGATGCATAATGGTGCTATGGCTGGAGAGCATCCTTTGGGCGAACATCCTTCCAGGACTCTGTTCGTGAGAAACATAAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGTACTCTTTATACAGCATGCAAACACCGAGGGTTTGTTATGATATCCTACTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCCTTGAGACGAAGGAAGCTTGACATACATTATTCTATACCGAAGGACAACCCTTCTGAAAAAGATATCAACCAAGGAACTCTTGTTGTTTTTAACCTTGAGTCTTCTGTATCAAATGAAGAACTTCGGCAAATATTTGGTGTCTATGGAGAAATCAAAGAGATCCGTGAAGCCCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCAGGGAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGTTTGGTACAACAATTACATCCACAATTGGAGCGGGAAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCGTTAACTGTAGTGCCGGTTTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCCTGAGTAATGGATCTGTTCTTGGAGTACACTCTATGTTACGAGCTCCATCTTTGGAGACTGTGTTGCATCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTAATGAGATCTGAATCAACTGGCAACCAATCTGGCTTCATTGACTCTGGTCATTCACCTTCACAACTGAAGCTAGGTATCCGGGCATCTTCAGCTGTTCATCCTCATTCACTTCCAGAACACCCTGATGGTTTGAACAACAACGTTCACTGCAATTCTCTAAATACGCTTGCAGGAAACATCAATCTACGATCATCTGAAAGACCTGATAGCAGGCAGCTATGTGGAGTGAACTTTAATGGTCGCTCAATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACATGCCCCATTCCTGGACCTCATTATGCATGGGGTAACTCCTACCGGCCCCAGCCTCCAGCTCCAGGTGTTGTATGGCCAAATTCTCCATCTTATATGAATGGAATTGCTGCTGCCCATACCCCAACCCAGGTCCATGGAGTTCCAAGAGCAGCATCCCATTTGATGCACACAGTTATGCCCATGAATAATCACCACGTAGGATCAGCACCAGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAGGCCTCTGGTTTCCATTCAGGTTCCATAGGGAATATGAATTTGTCTAACAATTCACCACAGTCTATGGATTTTTTCTCTCATATCTTCCCTCAAGTTGGTGGAAATTCTGTAGAGCTTCCTATCCCTCAACGGAATGTAGGACTACAATCTCATCATCAGCGGTGCATGGTTTTTCCTGGACGGGGCCAAATTCTTCCAATGATGAATTCATTTGACTCTTCAAATGAACGTGGTAGAAGCCGAAGAAATGAAGCAGTCTCTAATCAAGCAGATAAGAAGCAATATGAACTTGATATTGATCGCATAATGAGGGGTGAAGACAATCGTACTACACTTATGATAAAGAACATTCCTAACAAGTACACCTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACCTACGACTTCATCTATCTGCCCATTGACTTTAAGAACAAATGTAACGTAGGATATGCGTTCATTAACATGACTGATCCTGGCCTAATTATTCCATTCTATGAGGCATTTAATGGAAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGCATACAGGGAAAAGCTGCTCTCATTGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACAGATGGCCCCAATGCAGGCGATCAGGTTCCGTTTCCGATGGGGGTAAATGTACGCACTAGGCCTGGCAAAACTCGAAGCAATACGCCGGACGAAAATTCTGATGAAGGTCTACTAATTTCCGGAAATGGTGAGAATTATCCAAGTGGAGACACATCTTCTTCATGTCTTGTAAAGGATTTGGACCAGCCCGTACCATAA 2907 42.83 MPSEVLDLKGLSSSSFFSDDLRHTDEGQVGVWKSASVPNHRASNISGSSSSVEKFSIGECLPKNSLESHDSFPVRDQNASLILNRHAVGAERTSNYFSRSNEVNMMNSQYESSLFSSSLSDIFTRKLRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVTDGLDCLVETTGEDDAEDLDFFSNVGGMDLGDDGLSVGQKNSESPGLFNNLPGMHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSLVQQLHPQLEREDIGLYLQQGSPPVNCSAGFSGLVPSGTIKSSSLSNGSVLGVHSMLRAPSLETVLHHGISSSVPSSLPSVMRSESTGNQSGFIDSGHSPSQLKLGIRASSAVHPHSLPEHPDGLNNNVHCNSLNTLAGNINLRSSERPDSRQLCGVNFNGRSIELNEDVFASGGNRTCPIPGPHYAWGNSYRPQPPAPGVVWPNSPSYMNGIAAAHTPTQVHGVPRAASHLMHTVMPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLSNNSPQSMDFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERGRSRRNEAVSNQADKKQYELDIDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPGLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKTRSNTPDENSDEGLLISGNGENYPSGDTSSSCLVKDLDQPVP 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30664878 30673374 + MELO3C022357.2.1 Cme11g02368 343031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02368 968 CDD RRM2_MEI2_like 333 403 - -
Cme11g02368 968 Gene3D - 239 332 IPR012677 -
Cme11g02368 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 322 IPR000504 GO:0003723
Cme11g02368 968 SUPERFAMILY RNA-binding domain, RBD 246 409 IPR035979 GO:0003676
Cme11g02368 968 Pfam RNA recognition motif 2 789 885 IPR007201 -
Cme11g02368 968 MobiDBLite consensus disorder prediction 906 968 - -
Cme11g02368 968 PANTHER PROTEIN MEI2-LIKE 4 2 950 - -
Cme11g02368 968 CDD RRM3_MEI2_like 792 877 IPR034454 -
Cme11g02368 968 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 950 - -
Cme11g02368 968 MobiDBLite consensus disorder prediction 750 770 - -
Cme11g02368 968 MobiDBLite consensus disorder prediction 487 512 - -
Cme11g02368 968 Gene3D - 333 423 IPR012677 -
Cme11g02368 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 401 IPR000504 GO:0003723
Cme11g02368 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 315 IPR000504 GO:0003723
Cme11g02368 968 CDD RRM1_MEI2_like 248 324 IPR034453 -
Cme11g02368 968 MobiDBLite consensus disorder prediction 755 770 - -
Cme11g02368 968 SUPERFAMILY RNA-binding domain, RBD 791 876 IPR035979 GO:0003676
Cme11g02368 968 MobiDBLite consensus disorder prediction 934 961 - -
Cme11g02368 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 407 IPR000504 GO:0003723
Cme11g02368 968 SMART rrm1_1 335 403 IPR000504 GO:0003723
Cme11g02368 968 SMART rrm1_1 791 867 IPR000504 GO:0003723
Cme11g02368 968 SMART rrm1_1 250 318 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02368 - - - csv:101222875 1878.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02209 Cme-Chr3:28991383 Cme11g02368 Cme-Chr11:30664878 1.88E-23 dispersed
Cme08g00172 Cme-Chr8:1206841 Cme11g02368 Cme-Chr11:30664878 0 dispersed
Cme09g00839 Cme-Chr9:11006862 Cme11g02368 Cme-Chr11:30664878 1.01E-14 dispersed
Cme11g02368 Cme-Chr11:30664878 Cme12g01482 Cme-Chr12:22470843 5.11E-14 dispersed
Cme12g00016 Cme-Chr12:212231 Cme11g02368 Cme-Chr11:30664878 2.23E-07 dispersed
Cme11g02368 Cme-Chr11:30664878 Cme10g00605 Cme-Chr10:3871314 1.06E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46