Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02396 TACAACTCTTCTCCCTTTCTTCCTTTTGCTCTCTATCCTATTTTTCACCTCACACTCAAACATCTCCTTTCTTGGTATTGGGATCGGCATCGACATCGTTTTTGGTCTTTGCCTGTCTCCAAAGACATGGCCGGATTGGTCACTGGTTCCCAACACTATCCGCACGTTGTTGATGAGAGTCACCGTGGACCTCCACTGTCGTCGAAAATTTGTCGAGTTTGTAGTGATGAAATAGGACTCAAAGAAGATGGAAAAGTATTTGTGGCATGTCTTGCGTGTAATTTTCCTGTGTGTCGTCCTTGTTATGAATATGAAAGGAGCGAAGGAAACAAGTGTTGTCCCCAATGTAACACTCGCTACAAACGTCATAAAGGTTCACCCAGAGTGATCGGCGACGATGAAGAAGGTGACGAAGCTGATGATTTTGACGATGAGTTCCCCATTAAACACAACAAAAACGACGAATTTCAAGCAAAACAGCCTAATCATTCGGAAAACGATAGGTACAATGATCAGAATTGGCATAAAAATGTGCAGAGTTCGTTCTCGGTCGCAGGAAGTGTGAATGGAAAGGATATGGAAGGGGAGAAGGAAGGAGGTTATGGAAGTGTAGAATGGAAAGAAAGAATTGATAAATGGAAAGTGAGACAAGAGAAGAGAGGTTTGGGGAATAAAGAGGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCGGAGGCCCGGCAGCCATTATGGCGGAAACTTCCGATATCGTCAAGCAAAATCAGTCCATATCGGATCGTCATTGTACTCCGTCTCGTAATTCTTGCATTCTTCTTCCGATTTCGGATACTTACTCCGGCCTACGACGCCTTCCCCTTATGGCTGATCTCCGTTATCTGCGAAATCTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCACCAATCAACCGAGAAACCTATCTCGATCGTCTCTCCATGCGGTTCGAGCGCGAAGGCGAGCCCAATCGTCTCTCACCCATCGATTTCTTCGTCAGTACGGTGGATCCTCTGAAAGAACCGCCGATCATAACCGCCAACACCGTCCTCTCGATTCTCTCGGTTGATTATCCGGTGGAGAAGGTTAGCTGCTACGTTTCGGATGATGGAGCGTCGATGTTGCTGTTTGACACACTGGCGGAGACGGCGGAGTTTGCTCGGAGGTGGGTGCCGTTTTGTAAGAAGTTTAGTATTGAACCTAGGGCTCCGGAATTTTACTTCTCGCAGAAGATGGATTACTTGAAGGATAAGGTGTTGCCGAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATATGAAGAGTTCAAGGTCCGGGTCAATGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGGACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTATATCTGGGGAGTGAAGGTGCACTTGATGTCGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCACTTGTTCGAGTCTCTGCAGTCCTTACAAATGCACCATTCATCTTGAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTGTGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGGCATGATAGATATGCTAATCGTAATATAGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGCTGGCCTTCCTGGTGCTGCTGCTGCTGCGGTGGTTCAAGGAAATCGAAGTCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCTTGTTCAAGAAGAAGAAAATGATGGGAAAGAGTTATGTAAGGAAAGCTCCGGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTACGATGAGTTGGAGAAGTCATCACTCATGTCCCAGAAGAATTTCGAGAAAAGATTCGGGCAGTCCCCAGTTTTCATCGCTTCCACCCTTAAGGAAGATGGTGGGCTGCCAGAAGGGACTAACAGCACATCACTCGTTAAAGAAGCCATCCATGTGATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGGTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGCAGAGGATGGAAGTCGGTGTACTGCATGCCCCATAGACCAGCTTTCAAGGGATCAGCTCCGATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAAATCTTCCTCAGCCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTAGAGAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACATTGACGAACTTGGCTAGTGTCTGGTTCATGGCCTTGTTTATTTCCATCATTGCAACAGCGGTGCTGGAGCTTCGATGGAGTGAAGTGAGCATTGAAGACTTGTGGCGTAACGAGCAATTCTGGGTGATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTTCTCAAGGTCCTTGGTGGAGTAGACACCAATTTCACAGTTACAGCAAAAGCCGCTGAAGACACCGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACTCTTCTTATCCCACCAACCACTCTCATAATCTTGAATATGGTGGGAGTGGTTGCTGGAATTTCAGATGCAATCAATAATGGTTACGGTTCATGGGGTCCTCTATTTGGAAAGCTGTTTTTTGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAAACAAAACAGGACTCCCACCATCGTCGTCCTTTGGTCCGTGCTTCTTGCTTCCATATTTTCACTGGTTTGGGTGCGTATCGATCCCTTCTTGCCCAAGCAAACTGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 3249 46.04 YNSSPFLPFALYPIFHLTLKHLLSWYWDRHRHRFWSLPVSKDMAGLVTGSQHYPHVVDESHRGPPLSSKICRVCSDEIGLKEDGKVFVACLACNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVIGDDEEGDEADDFDDEFPIKHNKNDEFQAKQPNHSENDRYNDQNWHKNVQSSFSVAGSVNGKDMEGEKEGGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFEREGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLPSFVKERRAMKREYEEFKVRVNALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPHRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGISDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30838713 30843960 - MELO3C022385.2.1 Cme11g02396 343059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02396 1082 Coils Coil 439 459 - -
Cme11g02396 1082 SUPERFAMILY RING/U-box 64 142 - -
Cme11g02396 1082 CDD mRING-HC-C4C4_CesA_plant 69 119 - -
Cme11g02396 1082 MobiDBLite consensus disorder prediction 143 171 - -
Cme11g02396 1082 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 195 1082 - -
Cme11g02396 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 144 IPR013083 -
Cme11g02396 1082 Pfam Cellulose synthase 341 1075 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme11g02396 1082 Pfam Zinc-binding RING-finger 66 137 IPR027934 -
Cme11g02396 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 354 893 IPR029044 -
Cme11g02396 1082 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 65 154 - -
Cme11g02396 1082 MobiDBLite consensus disorder prediction 124 171 - -
Cme11g02396 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 195 1082 - -
Cme11g02396 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 65 154 - -
Cme11g02396 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 447 633 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01623 Cme-Chr8:16699527 Cme11g02396 Cme-Chr11:30838713 0 dispersed
Cme11g00612 Cme-Chr11:6922945 Cme11g02396 Cme-Chr11:30838713 0 dispersed
Cme11g02396 Cme-Chr11:30838713 Cme12g01272 Cme-Chr12:20818729 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02396 K10999 - csv:101205733 2024.21