Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02420 ATGGAGCTGGATGGCATCGATGGTATGCCATCCATGGATGTGATGGACGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACAACCACAAGTGTCCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCGTCATGTAAAACAAGGGTAGACAACCGTTGCCCGACATGCAGACAAGAGCTCGGTGATATCAGATGTCTAGCATTAGAAAAAATAGCTGAATCGCTTAAACTGGCTTGTAAATTCTCCACATTTGGGTGCCAAGAGATATTGCCTTACTACAGCAAACTCAAACATGAATCTGCCTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGCAATATTCCTTTCCTTGTTTCTCATCTTCGGGATGATCACAAGGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAATGCCACATGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCATTTCTGCGATTCATGGGGGACGAATCCGACGCTCGAAACTTCAGTTACAGCCTCGAGGTTGGTGGAAATGGCAGGAAGCTGATTTGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTAGAGACAGCCATGATGGTCTCATTATACAGCGAAACATGGCGTTGTTCTTCTCGGGAGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACTGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.03 MELDGIDGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFSTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDARNFSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31019888 31023349 - MELO3C022407.2.1 Cme11g02420 343083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02420 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 9 302 - -
Cme11g02420 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cme11g02420 304 CDD Sina 167 295 - -
Cme11g02420 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 294 IPR008974 GO:0005515
Cme11g02420 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Cme11g02420 304 SUPERFAMILY RING/U-box 47 111 - -
Cme11g02420 304 CDD RING-HC_SIAHs 51 89 - -
Cme11g02420 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cme11g02420 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 95 IPR013083 -
Cme11g02420 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 161 IPR013083 -
Cme11g02420 304 PANTHER UBIQUITIN LIGASE SINAT3 9 302 - -
Cme11g02420 304 SUPERFAMILY TRAF domain-like 106 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01140 Cme-Chr6:8793153 Cme11g02420 Cme-Chr11:31019888 8.69E-179 dispersed
Cme06g01141 Cme-Chr6:8798247 Cme11g02420 Cme-Chr11:31019888 1.34E-179 dispersed
Cme09g00925 Cme-Chr9:12800291 Cme11g02420 Cme-Chr11:31019888 3.06E-26 dispersed
Cme10g00035 Cme-Chr10:314579 Cme11g02420 Cme-Chr11:31019888 5.39E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02420 K04506 - csv:101209363 654.825