Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02420 | ATGGAGCTGGATGGCATCGATGGTATGCCATCCATGGATGTGATGGACGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACAACCACAAGTGTCCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCGTCATGTAAAACAAGGGTAGACAACCGTTGCCCGACATGCAGACAAGAGCTCGGTGATATCAGATGTCTAGCATTAGAAAAAATAGCTGAATCGCTTAAACTGGCTTGTAAATTCTCCACATTTGGGTGCCAAGAGATATTGCCTTACTACAGCAAACTCAAACATGAATCTGCCTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGCAATATTCCTTTCCTTGTTTCTCATCTTCGGGATGATCACAAGGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAATGCCACATGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCATTTCTGCGATTCATGGGGGACGAATCCGACGCTCGAAACTTCAGTTACAGCCTCGAGGTTGGTGGAAATGGCAGGAAGCTGATTTGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTAGAGACAGCCATGATGGTCTCATTATACAGCGAAACATGGCGTTGTTCTTCTCGGGAGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACTGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 915 | 45.03 | MELDGIDGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFSTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDARNFSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31019888 | 31023349 | - | MELO3C022407.2.1 | Cme11g02420 | 343083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02420 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 9 | 302 | - | - | |
Cme11g02420 | 304 | Pfam | Seven in absentia protein family | 95 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cme11g02420 | 304 | CDD | Sina | 167 | 295 | - | - | |
Cme11g02420 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 294 | IPR008974 | GO:0005515 | |
Cme11g02420 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270 | |
Cme11g02420 | 304 | SUPERFAMILY | RING/U-box | 47 | 111 | - | - | |
Cme11g02420 | 304 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
Cme11g02420 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - | |
Cme11g02420 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 95 | IPR013083 | - | |
Cme11g02420 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 161 | IPR013083 | - | |
Cme11g02420 | 304 | PANTHER | UBIQUITIN LIGASE SINAT3 | 9 | 302 | - | - | |
Cme11g02420 | 304 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g01140 | Cme-Chr6:8793153 | Cme11g02420 | Cme-Chr11:31019888 | 8.69E-179 | dispersed | |
Cme06g01141 | Cme-Chr6:8798247 | Cme11g02420 | Cme-Chr11:31019888 | 1.34E-179 | dispersed | |
Cme09g00925 | Cme-Chr9:12800291 | Cme11g02420 | Cme-Chr11:31019888 | 3.06E-26 | dispersed | |
Cme10g00035 | Cme-Chr10:314579 | Cme11g02420 | Cme-Chr11:31019888 | 5.39E-166 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02420 | K04506 | - | csv:101209363 | 654.825 |