Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02434 ATGGGTAAAAAGGGGAGTTGGATTGCAGCTATAAAGAGGGCTTTTACACCCAACTCCAAGGAAAAGCTTGGAAATGAATTTGAGAAAAGGAAGAAGAAAGAAAAGAACAAAGGAGTTGGAAAATTAAGAAATGGAGAGTCCAATTCCTTCATTCCTCTATTTAGGGAGCCAAGTAGTGTTGAGAAGATTTTCTTGGATTTTGAGAGAGAGCAACAAAGAGTAACATTTAGGCCTTCTTCACCACCAACACCTCCCTTTGTTACTCCTAGAAATGGCGCTTCTCCTAGAATCTCTTCCGCTCGACGACCCTCTCCGCCCGTCTCTCCTCCTAGAACTGCCTCTCCAACGTTCATAAATCGACCTAAGGGGTTTCGCTTTCGACCCGAACCAACTCTTCGGAACCACCATGCATCAGCAACTAAAATTCAAGCTGCGTACAGAGGTTATGTGGCAAGGAGGAGCTTTAGAGCATTGAAGGGGTTGGTGAGACTTCAAGGAGTGGTAAGAGGGCAAAATGTGAAGAGACAAACAATGAATGCAATGAAGCAAATGCAGCTTTTGGTTAGGGTTCAATCTCAAATTCAGTCAAGAAGGATTCAAATGCTTGAAACTCAGTCTCTTCATCATGGCCCTAACCACAAGGACATTGACACTGCCTTCATTCAAGCTTCAGAGGCAGGAGGTAACCAAGAAGATTGGGATGATAGTTTGCTAACAAGAGAAGAAATAGAGGCAAGATTGCAAAGAAAAGCTGAGGCTATTGTCAAAAGAGAGAGAGCTATGGCTTATGCATATTCTCATCAGTTATGGAAGGCAAGTCCAAACTCAGCTCAAACAGCAATGGCAGATATCAGAGGAACTTCAGCATTTCCATGGTGGTGGAATTGGTTAGAGCGCCAGTTACCTTCTTCTTCTACTACTAATAATCATAACAACAACAATAATAATATTTCCAATTCTGAACCTCAAACTCTCAAAAATTTTCTTCTAGCCCCTCAAACTCCACAACAAAACCAAACCACCACCACCACCCCAACTAATAACAAAAACAGCAACATTATTGATCATCATCATCATCAACAACCAATTACTCTCACCCCCAAATCCACAAAATCAGCCATCCTGATCACCACACCCAAACCGTCCCGACTCTCCCCGAACATGTTCCGAACCCCGCCACCGGGAACCTCGAGGTCGTTCTCAAGGGCAAGAGGTATTGATCATTCTTCACCATTTTTTGACGTGGGAATTAAAGATGATGAAAGCCTTACTAGTTGCCCTCCTTTCTCAGTCCCACATTATATGGCTCCAACAGTATCTGCCAAAGCCAAATTAAGAGGATGTTCAACACCTACACCTATTACTAATAATCAATCAAAAACAAGAATTTCTTTCCCTTTCAAATGGAATAATAAACCCAATTTGTTGTTCTCAAATAATTCTTCAAACAAAGACTCATCACCAAATATTAACTCTCAAAGGGGTTTGGATTATAATAATAATAATAATAATAATAATAATCATAATAATCAATCTGTGGGGAATTTGAGTGTGGATTCTTCGACTTCATTGCCTGCTGGAATTGGAAGAAAGCCATTTAATAGATTTGTGTGA 1614 40.83 MGKKGSWIAAIKRAFTPNSKEKLGNEFEKRKKKEKNKGVGKLRNGESNSFIPLFREPSSVEKIFLDFEREQQRVTFRPSSPPTPPFVTPRNGASPRISSARRPSPPVSPPRTASPTFINRPKGFRFRPEPTLRNHHASATKIQAAYRGYVARRSFRALKGLVRLQGVVRGQNVKRQTMNAMKQMQLLVRVQSQIQSRRIQMLETQSLHHGPNHKDIDTAFIQASEAGGNQEDWDDSLLTREEIEARLQRKAEAIVKRERAMAYAYSHQLWKASPNSAQTAMADIRGTSAFPWWWNWLERQLPSSSTTNNHNNNNNNISNSEPQTLKNFLLAPQTPQQNQTTTTTPTNNKNSNIIDHHHHQQPITLTPKSTKSAILITTPKPSRLSPNMFRTPPPGTSRSFSRARGIDHSSPFFDVGIKDDESLTSCPPFSVPHYMAPTVSAKAKLRGCSTPTPITNNQSKTRISFPFKWNNKPNLLFSNNSSNKDSSPNINSQRGLDYNNNNNNNNNHNNQSVGNLSVDSSTSLPAGIGRKPFNRFV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31128618 31132792 - MELO3C022423.2.1 Cme11g02434 343097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02434 537 Pfam IQ calmodulin-binding motif 136 156 IPR000048 GO:0005515
Cme11g02434 537 PANTHER IQ-DOMAIN 5-RELATED 1 534 - -
Cme11g02434 537 Pfam Protein of unknown function (DUF4005) 410 495 IPR025064 -
Cme11g02434 537 Gene3D - 120 155 - -
Cme11g02434 537 MobiDBLite consensus disorder prediction 334 354 - -
Cme11g02434 537 MobiDBLite consensus disorder prediction 74 137 - -
Cme11g02434 537 MobiDBLite consensus disorder prediction 21 51 - -
Cme11g02434 537 MobiDBLite consensus disorder prediction 379 404 - -
Cme11g02434 537 SMART iq_5 134 156 IPR000048 GO:0005515
Cme11g02434 537 MobiDBLite consensus disorder prediction 476 524 - -
Cme11g02434 537 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Cme11g02434 537 PANTHER IQ-DOMAIN 13 1 534 - -
Cme11g02434 537 MobiDBLite consensus disorder prediction 476 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02434 - - - csv:101211503 812.372
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01945 Cme11g02434 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01945 Cme-Chr7:24617306 Cme11g02434 Cme-Chr11:31128618 1.73E-107 dispersed
Cme11g02263 Cme-Chr11:29739482 Cme11g02434 Cme-Chr11:31128618 9.61E-25 dispersed
Cme11g02434 Cme-Chr11:31128618 Cme02g00846 Cme-Chr2:11037114 3.88E-25 dispersed
Cme11g02434 Cme-Chr11:31128618 Cme10g00057 Cme-Chr10:431699 2.28E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1327 . Blo12g00275 Bda03g00960 . Bpe04g00888 Bpe14g00792 Bma04g00856 . Cmo08g00188 . Cma06g01692 . . . . . . Bhi01g03674 Tan10g1432 . . . . . Cla06g00104 Cam06g0111 Cec06g0116 Cco06g0115 Clacu06g0117 Cmu06g0115 Cre06g0885 Cone14ag0616 Cone15ag0623 . Cone11ag0674 . . . Cme07g01945 . . . Bda13g00537 . . . . Sed07g0076 . . . . Car08g00167 . . Cpe17g01077 Bhi12g02466 Tan06g1528 Cmetu11g0606 . . . . . . . . . . . . . . Cme11g02434
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011147 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31