Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02451 ATGGACATAACTTTTTTCACACCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCGCCATCATCATCATCATCATCATCATCTTCACTTCTCCAATTTAGACATGCAAAGCTCCACGAGCCATTCGTCCGAGTACTCACCGGAACACTCTCCGTCTGCTGCTGCTGCTGCTGCCACCGCTACCGCCACTGGAAAATGGGCCTCCACCCTTCTTAAGGAGTGTGCTAGAGCCATCTCTGAGAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAATGAGTTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCCGAGCCACAGAAACTGGCCTCACTTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAAAATCATAACTTCGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCGTGGACAACATTTGGGCATGTGGCATCGAACGGTGCAATTCTCGAAGCGCTCGAGGGAGAAACGAAACTCCACATCATCGACATAAGCAACACCCTTTGCACTCAGTGGCCAACCCTACTGGAATCCTTAGCCACACGCAATGATGACACTCCACATCTAAAGCTAACGGTGGTGACAACAACAAGTATAGTGAAGTGTTTAATGAAGGAAATTGGACAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAGTTCAACCCTATAACAAATATCAACCATTTAACTGACCTCACAAATGAAGCCCTTAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTAAAAGTTGAAGAAAGAAACAATGTGATATCAATGTTGAAATTACTAAAGCCTAGAGTTTTAACAATAGTAGAGGAAGAAGCTGATTTCATAAGCTCTACAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAAGAGAGCTTTGGGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCATGATCAAATTAGTGAGGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGACAAAAAGGCTCAAACAAGCACTTTTCTCATCAGCTAATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCTGGTTGGGCATTGCTGCGTCCGGCCACGGCTGCTGTCGGAGTCGACGAAGAAGAAAATGGTGATGCTGAGCCAAGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTTTGGGTTTCAGCATGGAAACCCTAA 1386 44.23 MDITFFTPKEAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLKPRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSIVRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWALLRPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSAWKP 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31236842 31238968 + MELO3C022440.2.1 Cme11g02451 343114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02451 461 PANTHER PROTEIN SHORT-ROOT-LIKE 36 460 - -
Cme11g02451 461 MobiDBLite consensus disorder prediction 40 61 - -
Cme11g02451 461 ProSiteProfiles GRAS family profile. 62 460 IPR005202 -
Cme11g02451 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 460 IPR005202 -
Cme11g02451 461 Pfam GRAS domain family 73 460 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00273 Cme-Chr11:2969573 Cme11g02451 Cme-Chr11:31236842 1.15E-131 dispersed
Cme11g02451 Cme-Chr11:31236842 Cme01g00709 Cme-Chr1:6656238 2.90E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42267 PF03514 GRAS 1.40E-93 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02451 - - cmo:103498966 863.218