Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02454 ATGCCGCTTCCTCCCAAACTGAGCCGACCGCTGCACAGGGACTCGGACGTTCCGGAGATGCCTTCCAACAGCTTGTGGGTTGGCAACTTATCCATGGAGGTCACCGATGGGGATCTCATGAATTTGTTTGCACAGTTTGGTGTGATTGATAGTGTTACTTCCTATCCCTCCAGGAGCTACGCGTTCATCTTCTTTAAGCACATGGAGGATGCCCAAGCTGCCAAGGAGGCTCTTCAGGGTTTTTTTCTGCGTGGGAATTCTATCAAAATCGAGTTTGCCAGACCGAAACGTATGGAGAAGCAGAATTTCCATGTTTCTCCTCAATCTTCGCGTCTTAGCTCCGCTACTTGTCTGCCTAAAACAAATAAGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCAGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTACGAGATCGTAATACTGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATGATGAATGGAAAACGCATTGGTGGAGAGCAGCTACGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCGGATACCAGAGATGGGCATGGACAGCTTCAGGCTAGAAATATGGGGATGGGTGACTTCCAATCTGGTTATAAAAGACCACTGCATGCTCAATCTTCAGAAGTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGAGAGAATTACAAGTTTCCATACCAGGCATTTTGCCTTTGTAGAATTTAGAAGTGTTGATGAAGCACGACGAGCTAAGGAGGGTCTACAAGGACGACTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGGACCTGTAAAAGAGCACCCTGGCTTTTATCCCGGTGGTAAAGAGGCTAGGCCTGATATGTTCTTCAATGAGCATCAAATTCGTCCTCCACCAATGGACCTGTTGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCACTACCATCTAGTGGTATTCTTGGACCAAATACAGGAGTAAGACCACCACCCTTTGGTCCTCCACCGGGTATCTCAGGGCCCCCTGAGTTTAATGACTTGGCCACCTCTCATAGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCAGCACCTGGGATACTTTCTTCTCCAGCCACTGGTATTCGTCCACCTCCACCAGTGAGGTCCACTCCAAATTCATGGGATGTTTTAGATGTAAATCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCACCATCCTTGGATGATGTTTCTTTTCCTCCAAGAAAAATGGATAACCGGAGCATGGGTTTTGATCAGCAATATGGTATTGGTCCTATAAGTGACGGAGGTTCTTCTGTTCCATATGGCAATGCTCCAGCAAAGACTCCACCCATTCCTATAGGTGTAAGGGCCCCGGTTAGTGGTCCGGGCCAGAGCCATGCTGAAAATGATTTTATATGGCGCGGAATAATTGCCAAGGGAGGAACACCTGTTTGCCATGCTCGTTGTGTCCCAATTGGGGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAACTCACTAAACATTATGCTGAAGCAACCGGATTCGACATTGTCTTTTTCCTGCCTGATAGTGAGGATGATTTTGCATCCTATACCGAATTCCTGCGTTACCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTAGTTCCTCCTTCAGAGTTTCTGAGAAAAGTTTTGAAAGTTTCTGGTCCCGAGCGGCTTTATGGTCTTGTTCTCAAATTTCCTCAGGTGTCTGTTAGCGAAGCTGCTCCCCAACAGTCATATCTACCTGTTCCTACATCTGACTATGGTGAGAGACAGCATGTTTTGCCTTCACAAACAGAATATGGGTCAGTGCCTCCAAAACAGGAGCAACTTCCTCCAATGGATTATAACAGGGTTCTGCATGACGAAATCAAGGAGCCCCCGAAACTTCTACCCACAAGTGAGCCACAACCACTAGCAGTTCAGCCCTTGCCTCAAGAGTATTCTGGTAACAACAATACGGCTGCAATTTCGCAAGCTGGGTTAGCGTTAACACCTGAGCTCATTGCCACCTTGGTTTCTTTACTACCTGGTAAGACACAGTCATCCAGTTTAGAGAGTGCCAAACAACCAGCAGTCTCACCACAACCTCCGGTTCCGATTCCTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGCCATCAATCTTCTGATCCAAACGGTCAGCCATTTCAGCAGATGGGAAATCATTTTAATCCTCAGGGACAGAACCTTTCTCAATTTCAGCCTTATCCACCTCTCCCCCAGACGCCTAACCAGCATGCACCACAGGCCATTGGAACAAGCCAAATCCAAGATGCTGCTGTCAGTCTGCCACAGCAGCAGCAGGTACCTATTCCTTACAGGCCTTTGTCTACTTACTCTGCGCCTCCTGAAAATGCACAAGCTTCTGGTTTGGCCTTGGCCAATTCTCAGTATCAGCATGATGTCTCACAAATGAGCCAGAGAGGTTATGGGCCAGTTAATGGAGTTGATACTTCTGGCTATGGTCCACCAGTTATGCAGCAATCAACAAATACACTGACCTTATCTAATCAAGGTCAGGGTTCTACAGCGCAGTCACAACCTATAACTCAATTAGCATCAGATAGAGTGAACCCTGAGCTTCCTTATCAGATGCAGCATTTGCAATCTGCAAACCTTGGCACTGGCACTGGCACTGGGACCAGTGATGTTGAGGCAGGCAAGGACCAGAGATATCGATCTACACTCCAATTTGCTGCCAATTTACTCCTCCAGATTCAGCAGCAACAGCAGCAACAGCAGCAGCAAGCAGGCTGGGGTTCAGGAAATCAATAG 3120 46.06 MPLPPKLSRPLHRDSDVPEMPSNSLWVGNLSMEVTDGDLMNLFAQFGVIDSVTSYPSRSYAFIFFKHMEDAQAAKEALQGFFLRGNSIKIEFARPKRMEKQNFHVSPQSSRLSSATCLPKTNKAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFVEYVRLEDASQALRMMNGKRIGGEQLRVDFLRSQPMRRDQWPDTRDGHGQLQARNMGMGDFQSGYKRPLHAQSSEVRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHTRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPGPVKEHPGFYPGGKEARPDMFFNEHQIRPPPMDLLGHPHPMVQNKFPGPLPSSGILGPNTGVRPPPFGPPPGISGPPEFNDLATSHSFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPVRSTPNSWDVLDVNQFQRDSKRSRIDGPPSLDDVSFPPRKMDNRSMGFDQQYGIGPISDGGSSVPYGNAPAKTPPIPIGVRAPVSGPGQSHAENDFIWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSVSEAAPQQSYLPVPTSDYGERQHVLPSQTEYGSVPPKQEQLPPMDYNRVLHDEIKEPPKLLPTSEPQPLAVQPLPQEYSGNNNTAAISQAGLALTPELIATLVSLLPGKTQSSSLESAKQPAVSPQPPVPIPPVVSNKGATSEGWMVGHQSSDPNGQPFQQMGNHFNPQGQNLSQFQPYPPLPQTPNQHAPQAIGTSQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENAQASGLALANSQYQHDVSQMSQRGYGPVNGVDTSGYGPPVMQQSTNTLTLSNQGQGSTAQSQPITQLASDRVNPELPYQMQHLQSANLGTGTGTGTSDVEAGKDQRYRSTLQFAANLLLQIQQQQQQQQQQAGWGSGNQ 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31263017 31274351 + MELO3C022443.2.1 Cme11g02454 343117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02454 1039 CDD RRM3_Spen 253 323 - -
Cme11g02454 1039 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Cme11g02454 1039 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 324 IPR000504 GO:0003723
Cme11g02454 1039 CDD RRM3_Spen 25 94 - -
Cme11g02454 1039 MobiDBLite consensus disorder prediction 433 489 - -
Cme11g02454 1039 Gene3D - 12 103 IPR012677 -
Cme11g02454 1039 Gene3D - 237 328 IPR012677 -
Cme11g02454 1039 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 13 1039 - -
Cme11g02454 1039 SMART rrm1_1 252 320 IPR000504 GO:0003723
Cme11g02454 1039 SMART rrm1_1 129 196 IPR000504 GO:0003723
Cme11g02454 1039 SMART rrm1_1 24 91 IPR000504 GO:0003723
Cme11g02454 1039 SUPERFAMILY RNA-binding domain, RBD 123 222 IPR035979 GO:0003676
Cme11g02454 1039 Pfam SPOC domain 540 659 IPR012921 -
Cme11g02454 1039 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 200 IPR000504 GO:0003723
Cme11g02454 1039 PANTHER RNA RECOGNITION MOTIF-CONTAINING 13 1039 - -
Cme11g02454 1039 CDD RRM3_Spen 130 199 - -
Cme11g02454 1039 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 89 IPR000504 GO:0003723
Cme11g02454 1039 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 194 IPR000504 GO:0003723
Cme11g02454 1039 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 317 IPR000504 GO:0003723
Cme11g02454 1039 Gene3D - 107 236 IPR012677 -
Cme11g02454 1039 SUPERFAMILY RNA-binding domain, RBD 246 330 IPR035979 GO:0003676
Cme11g02454 1039 SUPERFAMILY RNA-binding domain, RBD 9 104 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02454 - - - csv:101214330 1878.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02816 Cme-Chr6:35450358 Cme11g02454 Cme-Chr11:31263017 1.01E-10 dispersed
Cme11g01003 Cme-Chr11:14326961 Cme11g02454 Cme-Chr11:31263017 1.18E-24 dispersed
Cme11g02454 Cme-Chr11:31263017 Cme04g02457 Cme-Chr4:31131751 1.28E-11 dispersed
Cme11g02454 Cme-Chr11:31263017 Cme01g00061 Cme-Chr1:465786 1.97E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41