Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02456 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCTGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTCTTTTGTCAAGATTGTGATGAACCAATTCACTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGACGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCCGATAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCAATTGCCTGCAGACCAACGAAGTCAAGCACATCATACAAAAAGCCTAGGATTGAGATGGTCGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 45.52 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGNAIACRPTKSSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31278052 31281429 + MELO3C022445.2.1 Cme11g02456 343119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02456 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cme11g02456 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cme11g02456 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cme11g02456 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme11g02456 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme11g02456 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cme11g02456 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cme11g02456 237 Gene3D Classic Zinc Finger 1 96 - -
Cme11g02456 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cme11g02456 237 CDD Bbox1_BBX-like 5 47 - -
Cme11g02456 237 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01351 Cme-Chr7:19039927 Cme11g02456 Cme-Chr11:31278052 1.56E-44 dispersed
Cme08g00909 Cme-Chr8:5976207 Cme11g02456 Cme-Chr11:31278052 3.17E-24 dispersed
Cme11g00162 Cme-Chr11:1739205 Cme11g02456 Cme-Chr11:31278052 1.30E-35 dispersed
Cme11g02456 Cme-Chr11:31278052 Cme03g01907 Cme-Chr3:27183411 2.06E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42268 PF00643 zf-B_box 5.20E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02456 - - csv:101215327 468.388