Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02456 | ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCTGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTCTTTTGTCAAGATTGTGATGAACCAATTCACTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGACGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCCGATAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCAATTGCCTGCAGACCAACGAAGTCAAGCACATCATACAAAAAGCCTAGGATTGAGATGGTCGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA | 714 | 45.52 | MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGNAIACRPTKSSTSYKKPRIEMVDDEEFFTVPDLG | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31278052 | 31281429 | + | MELO3C022445.2.1 | Cme11g02456 | 343119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02456 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 1 | 237 | - | - | |
Cme11g02456 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 237 | - | - | |
Cme11g02456 | 237 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Cme11g02456 | 237 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cme11g02456 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cme11g02456 | 237 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
Cme11g02456 | 237 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
Cme11g02456 | 237 | Gene3D | Classic Zinc Finger | 1 | 96 | - | - | |
Cme11g02456 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Cme11g02456 | 237 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cme11g02456 | 237 | CDD | Bbox1_BBX-like | 56 | 98 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme07g01351 | Cme-Chr7:19039927 | Cme11g02456 | Cme-Chr11:31278052 | 1.56E-44 | dispersed | |
Cme08g00909 | Cme-Chr8:5976207 | Cme11g02456 | Cme-Chr11:31278052 | 3.17E-24 | dispersed | |
Cme11g00162 | Cme-Chr11:1739205 | Cme11g02456 | Cme-Chr11:31278052 | 1.30E-35 | dispersed | |
Cme11g02456 | Cme-Chr11:31278052 | Cme03g01907 | Cme-Chr3:27183411 | 2.06E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42268 | PF00643 | zf-B_box | 5.20E-08 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02456 | - | - | csv:101215327 | 468.388 |