Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02461 ACATTATTCACCATATTTCCATCTATAAATACCTTCTCCCCTTCCCCTAATTCTTTCACTTCACCATTTCAATATCTCCCTTTCACACACTCTCTCTTTCTAATTTACCGATCACTCTCACTCCCAACCATGGCTTCCACCAACGGCGCTTTGCCTTCCGGCTCCGGTTTGATCGTCAGTTTCGGCGAGATGTTGATCGATTTCGTCCCCACAGTATCCGGCGTCTCTTTAGCCGAGGCACCAGGATTTCTCAAGGCTCCCGGTGGTGCTCCGGCCAACGTCGCGATTGCCGTCAGCCGACTCGGCGGACGTGCTGCCTTCGTAGGAAAGCTCGGCGATGATGAGTTTGGGCGTATGTTGGAAGGAATAGTTAAGGAGAACGGCGTTGACGCTTCCGGAATCCGCTTCGATCAAGGCGCTAGAACCGCCTTGGCTTTCGTCACTCTACGCGCCGACGGTGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGATATGCTTCTCAAGCCGGAGGAATTGGATCTCGATCTCATCAGATCCGCCAAAATCTTTCACTATGGATCAATAAGTTTGATCGTGGAGCCCTGCAGATCGGCACACATAAAAGCAATGGATGAGGCTAAGAAAGCAGGTGTTTTACTTTCATATGACCCAAATTTGAGGCTGCCTTTGTGGCCCTCTGCAAATGAGGCTCGTGAACAGATCAAGAGCATTTGGAACAAGGCCGACATCATCAAGGTCAGTGATGAGGAGCTCAAATTCCTCACCCAGAAAGATAAGGTTGATGATGAAAACGCCATGTCTCTCTGGCACGATGGCTTGAAGCTCCTCCTCGTTACTCTCGGCGAGCAAGGCTGCAGATACTACACCAAGAACTTCCGTGGCTGTGTGGATCCATTCAAGGTTAAGGCTGTGGACACAACCGGAGCCGGTGACTCATTCGTTGGTGCTCTCCTTTCCAAGATCGTCGACGACCAATCAGTGCTTCAGGATGAGAAGAAGCTGAGGGATATATTGAGGTTTGCGAATGCTTGTGGAGCCATTACAACAACCAAGAAAGGAGCAATTCCAGCTCTTCCAACAGAGGCTGACGTGGCTGCCTTGATCAAGGCTTCTTCTTAG 1125 50.49 TLFTIFPSINTFSPSPNSFTSPFQYLPFTHSLFLIYRSLSLPTMASTNGALPSGSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGDDEFGRMLEGIVKENGVDASGIRFDQGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELDLDLIRSAKIFHYGSISLIVEPCRSAHIKAMDEAKKAGVLLSYDPNLRLPLWPSANEAREQIKSIWNKADIIKVSDEELKFLTQKDKVDDENAMSLWHDGLKLLLVTLGEQGCRYYTKNFRGCVDPFKVKAVDTTGAGDSFVGALLSKIVDDQSVLQDEKKLRDILRFANACGAITTTKKGAIPALPTEADVAALIKASS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31305727 31309427 - MELO3C022452.2.1 Cme11g02461 343124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02461 374 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 307 320 IPR002173 GO:0016773
Cme11g02461 374 CDD bac_FRK 57 357 - -
Cme11g02461 374 Gene3D - 56 374 IPR029056 -
Cme11g02461 374 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 88 112 IPR002173 GO:0016773
Cme11g02461 374 Pfam pfkB family carbohydrate kinase 57 362 IPR011611 -
Cme11g02461 374 PRINTS Ribokinase signature 83 102 IPR002139 GO:0016301
Cme11g02461 374 PRINTS Ribokinase signature 278 289 IPR002139 GO:0016301
Cme11g02461 374 PRINTS Ribokinase signature 238 253 IPR002139 GO:0016301
Cme11g02461 374 SUPERFAMILY Ribokinase-like 58 370 IPR029056 -
Cme11g02461 374 PANTHER HEXOKINASE FAMILY MEMBER 49 367 - -
Cme11g02461 374 PANTHER BNAA04G18320D PROTEIN 49 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02461 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - csv:101213366 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01382 Cme-Chr7:19362478 Cme11g02461 Cme-Chr11:31305727 1.50E-16 dispersed
Cme09g01474 Cme-Chr9:19949307 Cme11g02461 Cme-Chr11:31305727 5.81E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44