Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02478 ATGTCAAAGATGGATGGTTTTGAGTTAACCAAGAGAGTAAATGATGAATTCAAGCTTCCTGTGATTATGATTTCGACCGAAAATGAAGAAAGCATCATGTATAGGGCGATACAAGAAGGGGTTGTACTCTACTTAGTGAAACCCTTCCCTCCAAATGACCTAAAAAACATTTGGCAATTTTCCATAACCACCGAATCAAAAAGTAAACCAAACCCTTGCTTGAGTACTATTGAAGAGACAATTATAAGCACCAATGGCGAAGGCGAGCTTCACGCATTTGAAACGCACTCGGTCTCGGGCTCAAATGAAGTAATATTAGAAAGGAAGAAGAAGAAGAAGAAGAAGAGTTCAAAAGAAAAGGATCGAGAGAAATCAAATGGTAAAAAGGAAGTGAAGTCTACTAAAAAAAAACCAAAGGTGGTTTGGACAGATTTCCTTCAATATAGATTCTTGCAAGCTGTTCATTACATTGGTTTGGACAGAGCTGTTCCAAAGAAAATCCTTGAAGTCATGAATGTGCCTGGTTTGACTAGGGAAAATGTTGCTAGCCATTTGCAGGTTCTTTTTTCTATTATCATCCTAAATTCATATGATGTGTTAAATTGTCAAGTTTACTCCATGAAATCCCCAAGTTTGTGTTTATTTAGTCATTGA 654 36.85 MSKMDGFELTKRVNDEFKLPVIMISTENEESIMYRAIQEGVVLYLVKPFPPNDLKNIWQFSITTESKSKPNPCLSTIEETIISTNGEGELHAFETHSVSGSNEVILERKKKKKKKSSKEKDREKSNGKKEVKSTKKKPKVVWTDFLQYRFLQAVHYIGLDRAVPKKILEVMNVPGLTRENVASHLQVLFSIIILNSYDVLNCQVYSMKSPSLCLFSH 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31423033 31423938 + MELO3C022469.2.1 Cme11g02478 343141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02478 217 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 186 IPR045279 GO:0009736
Cme11g02478 217 PANTHER RESPONSE REGULATOR 23-RELATED 1 186 - -
Cme11g02478 217 Gene3D - 133 189 - -
Cme11g02478 217 Coils Coil 106 126 - -
Cme11g02478 217 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 190 IPR006447 GO:0003677
Cme11g02478 217 Gene3D - 1 70 - -
Cme11g02478 217 Pfam Response regulator receiver domain 1 56 IPR001789 GO:0000160
Cme11g02478 217 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Cme11g02478 217 SUPERFAMILY CheY-like 1 63 IPR011006 -
Cme11g02478 217 SUPERFAMILY Homeodomain-like 134 190 IPR009057 -
Cme11g02478 217 MobiDBLite consensus disorder prediction 104 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02478 - - K14491 cmax:111494471 207.608
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01932 Cme11g02478 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02478 Cme-Chr11:31423033 Cme11g02055 Cme-Chr11:28293377 3.73E-24 dispersed
Cme11g02478 Cme-Chr11:31423033 Cme07g00108 Cme-Chr7:673597 1.85E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1194 . . . . . . . . . . . . . Car14g01271 . . Cpe03g01211 . . . . . . . . . . . . . . Cone14ag0575 . . . . . . Cme07g01932 . . . Bda13g00257 . . . Bma06g01420 . . . . . . . . . . . . . . . . Cla07g01448 Cam07g1550 Cec07g1645 Cco07g1608 Clacu07g1538 Cmu07g1507 Cre07g1884 . . . Cme11g02478
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013410 0 0 0 0 0 1 1 1 1 2 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42269 PF00072 Response_reg 3.70E-10 CL0304 Cme TR