Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g02481 | ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAACTTCAGCAGCAACGCCCTGATCTCCATCTAGATTCCCCTCCAAGTTCTGACCATGTCAACCACTTCAACGGCGGCAGCGGCGGGTCCGGTGGCAGTGGCGATGTCATGGTTCGTCGCCCTAGGGGCCGCCCGGCCGGCTCCAAGAACAAGCCAAAGCCCCCCGTAATCATCACGCGCGAGAGCGCCAACACGCTTAGAGCTCATATCTTGGAAGTTGGTGGCGGATGTGACGTCTTTGAAGCTGTAGCCGGCTACGCTCGACGGCGACAACGCGGGATCTGTGTGTTGAGTGGAAGTGGGATTGTTAATAATGTTAGCTTACGGCAACCCGCAGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCAGGATCGTTCTTGCCTCCGCCTGCTCCGCCTGGTGCTACTAGTCTTACGATTTTCTTGGCCGGAGGACAAGGGCAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATTGCGTCGGGGCCAGTAATCGTCATAGCATCGTCGTTTAGCAACGTTGCATACGAGAGGTTGCCATTGGATGAAGAAGAAATGCCGATGCAGGCAGGTGGCGGTGACGGTGACGGAGGCGAGGGTGGCGGGGAGGGTCACAATAACCCTTTTCCTGATGCATCTTCGGGTTTGCCATTTCTAAACCTGCCTATGAACATGCCCAATCAGAATCAATTTTTTGGTTGA | 765 | 54.51 | MATLNLGSASHFVDQLQQQRPDLHLDSPPSSDHVNHFNGGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEEMPMQAGGGDGDGGEGGGEGHNNPFPDASSGLPFLNLPMNMPNQNQFFG | 254 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 31446850 | 31448638 | - | MELO3C022471.2.1 | Cme11g02481 | 343144 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g02481 | 254 | MobiDBLite | consensus disorder prediction | 206 | 236 | - | - | |
| Cme11g02481 | 254 | CDD | DUF296 | 81 | 164 | IPR005175 | - | |
| Cme11g02481 | 254 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 16 | 251 | IPR014476 | GO:0003680 | |
| Cme11g02481 | 254 | ProSiteProfiles | PPC domain profile profile. | 77 | 213 | IPR005175 | - | |
| Cme11g02481 | 254 | MobiDBLite | consensus disorder prediction | 21 | 42 | - | - | |
| Cme11g02481 | 254 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 81 | 194 | IPR005175 | - | |
| Cme11g02481 | 254 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 16 | 251 | - | - | |
| Cme11g02481 | 254 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 77 | 209 | - | - | |
| Cme11g02481 | 254 | MobiDBLite | consensus disorder prediction | 21 | 70 | - | - | |
| Cme11g02481 | 254 | Gene3D | - | 80 | 210 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g01795 | Cme-Chr3:26405468 | Cme11g02481 | Cme-Chr11:31446850 | 5.62E-46 | dispersed | |
| Cme04g00106 | Cme-Chr4:850979 | Cme11g02481 | Cme-Chr11:31446850 | 5.05E-93 | dispersed | |
| Cme06g02479 | Cme-Chr6:31767235 | Cme11g02481 | Cme-Chr11:31446850 | 2.77E-92 | dispersed | |
| Cme09g01678 | Cme-Chr9:21490222 | Cme11g02481 | Cme-Chr11:31446850 | 7.59E-73 | dispersed | |
| Cme10g00915 | Cme-Chr10:6686355 | Cme11g02481 | Cme-Chr11:31446850 | 3.59E-67 | dispersed | |
| Cme11g02481 | Cme-Chr11:31446850 | Cme11g02522 | Cme-Chr11:31705602 | 1.18E-62 | dispersed | |
| Cme02g01693 | Cme-Chr2:24024980 | Cme11g02481 | Cme-Chr11:31446850 | 8.43E-67 | transposed | |
| Cme11g02481 | Cme-Chr11:31446850 | Cme06g00302 | Cme-Chr6:1851064 | 1.90E-103 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g02481 | - | - | csv:101203160 | 466.463 |