Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g02501 | ATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCCATCGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCCGGAGAGAGAGTACAACAAACAAAAGAGTTGCTCGCTTCCTGTGAAAGCATTGAGTGGCAGGTGGATGAATTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACGCAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCCGGCAAGGAGCAAACAGGAATTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGATAGATCAAACTTATATACAGCCCACCAAGCGAATGATGACTTCATCACATCGGAATCAGACAGACAGCTGCTTCTTATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTACAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTTTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTCTTCCTCACCTAA | 741 | 43.99 | MPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERVQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGIASASGMRRELMRLPNAHETDRSNLYTAHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 31571696 | 31575615 | + | MELO3C022490.2.1 | Cme11g02501 | 343164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g02501 | 246 | Pfam | SNARE domain | 191 | 242 | IPR000727 | - | |
| Cme11g02501 | 246 | ProSitePatterns | Syntaxin / epimorphin family signature. | 160 | 199 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cme11g02501 | 246 | SUPERFAMILY | SNARE fusion complex | 153 | 216 | - | - | |
| Cme11g02501 | 246 | Gene3D | - | 2 | 104 | - | - | |
| Cme11g02501 | 246 | SMART | tSNARE_6 | 149 | 216 | IPR000727 | - | |
| Cme11g02501 | 246 | SUPERFAMILY | t-snare proteins | 5 | 100 | IPR010989 | GO:0016020|GO:0016192 | |
| Cme11g02501 | 246 | PANTHER | SYNTAXIN PROTEIN | 1 | 245 | - | - | |
| Cme11g02501 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 154 | 216 | IPR000727 | - | |
| Cme11g02501 | 246 | PANTHER | SYNTAXIN | 1 | 245 | IPR045242 | - | |
| Cme11g02501 | 246 | Gene3D | - | 161 | 225 | - | - | |
| Cme11g02501 | 246 | CDD | SNARE_Qc | 157 | 214 | - | - | |
| Cme11g02501 | 246 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020|GO:0048193 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g02818 | Cme-Chr6:35482051 | Cme11g02501 | Cme-Chr11:31571696 | 1.07E-07 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g02501 | K08500 | - | csv:101212527 | 421.394 |