Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02516 | GACTCAAACCAAAATCACACACTAAAACACACAAAACTTTCACACAATTCATCAAAATTTCATCAAGCTTTCAAATGTAAAGGGAACAAAAAAAAAGGGAAAAAACCCCATTTGCCCTTTCATATGACCCACACCCAAAGATCCACTGCCCTCCATCAAGACAGCGTCATGAGTGCCGGCGAAGGCGGCGTCGGTCACGGCGGAGGGCCCTGTGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGATGCATTTTCGCCCCCTATTTCGACTCTGATCAAGGCGCCGCCCACTTCGCCGCTGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCACCTCCCAAACGTCTCGACGCTTGCGTTACGCTTTGTTACGAAGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTTCTCAAATTTTCTCCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCTAAACTTTCCACCTTGCAGCGGCTATTTCCACCAGCGCTACAAACCCCATCACCGACCACTTGCAACACTCCGCTACCAGAAGCAATCCCGGACTCGGACATGGGTTTGCTTTCCAATGTTCCAATGATCCTTGACCCCCTACAAACCCAGCTAGGTTGTAACGAAATGACAAATAGCTTTCTGAACCCAGTTGATTATCAAGATCAGATGGGTGAAGATGGTGATCTTCAATCTTTGGCTCGAGAATTCGTCTCGAGGTACTTGCCTGGAGTACGAATGCGACCTCCATGCTCACAGATTTAA | 810 | 48.89 | DSNQNHTLKHTKLSHNSSKFHQAFKCKGNKKKGKKPHLPFHMTHTQRSTALHQDSVMSAGEGGVGHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVVNLQAELAYIQAKLSTLQRLFPPALQTPSPTTCNTPLPEAIPDSDMGLLSNVPMILDPLQTQLGCNEMTNSFLNPVDYQDQMGEDGDLQSLAREFVSRYLPGVRMRPPCSQI | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31667442 | 31670901 | - | MELO3C022505.2.1 | Cme11g02516 | 343179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02516 | 269 | Pfam | Lateral organ boundaries (LOB) domain | 70 | 168 | IPR004883 | - | |
Cme11g02516 | 269 | ProSiteProfiles | LOB domain profile. | 69 | 171 | IPR004883 | - | |
Cme11g02516 | 269 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 64 | 258 | - | - | |
Cme11g02516 | 269 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 19 | 64 | 258 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme06g00253 | Cme11g02516 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme10g00914 | Cme-Chr10:6680852 | Cme11g02516 | Cme-Chr11:31667442 | 2.73E-38 | dispersed | |
Cme11g02516 | Cme-Chr11:31667442 | Cme10g01432 | Cme-Chr10:17308943 | 3.07E-36 | dispersed | |
Cme11g02516 | Cme-Chr11:31667442 | Cme11g02517 | Cme-Chr11:31682796 | 3.03E-43 | tandem | |
Cme04g01036 | Cme-Chr4:14194325 | Cme11g02516 | Cme-Chr11:31667442 | 1.06E-44 | transposed | |
Cme04g02065 | Cme-Chr4:28030339 | Cme11g02516 | Cme-Chr11:31667442 | 3.73E-47 | transposed | |
Cme11g02516 | Cme-Chr11:31667442 | Cme06g00253 | Cme-Chr6:1538026 | 1.74E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42271 | PF03195 | LOB | 3.60E-36 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02516 | - | - | csv:101220840 | 427.172 |