Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02516 GACTCAAACCAAAATCACACACTAAAACACACAAAACTTTCACACAATTCATCAAAATTTCATCAAGCTTTCAAATGTAAAGGGAACAAAAAAAAAGGGAAAAAACCCCATTTGCCCTTTCATATGACCCACACCCAAAGATCCACTGCCCTCCATCAAGACAGCGTCATGAGTGCCGGCGAAGGCGGCGTCGGTCACGGCGGAGGGCCCTGTGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGATGCATTTTCGCCCCCTATTTCGACTCTGATCAAGGCGCCGCCCACTTCGCCGCTGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCACCTCCCAAACGTCTCGACGCTTGCGTTACGCTTTGTTACGAAGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTTCTCAAATTTTCTCCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCTAAACTTTCCACCTTGCAGCGGCTATTTCCACCAGCGCTACAAACCCCATCACCGACCACTTGCAACACTCCGCTACCAGAAGCAATCCCGGACTCGGACATGGGTTTGCTTTCCAATGTTCCAATGATCCTTGACCCCCTACAAACCCAGCTAGGTTGTAACGAAATGACAAATAGCTTTCTGAACCCAGTTGATTATCAAGATCAGATGGGTGAAGATGGTGATCTTCAATCTTTGGCTCGAGAATTCGTCTCGAGGTACTTGCCTGGAGTACGAATGCGACCTCCATGCTCACAGATTTAA 810 48.89 DSNQNHTLKHTKLSHNSSKFHQAFKCKGNKKKGKKPHLPFHMTHTQRSTALHQDSVMSAGEGGVGHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVVNLQAELAYIQAKLSTLQRLFPPALQTPSPTTCNTPLPEAIPDSDMGLLSNVPMILDPLQTQLGCNEMTNSFLNPVDYQDQMGEDGDLQSLAREFVSRYLPGVRMRPPCSQI 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31667442 31670901 - MELO3C022505.2.1 Cme11g02516 343179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02516 269 Pfam Lateral organ boundaries (LOB) domain 70 168 IPR004883 -
Cme11g02516 269 ProSiteProfiles LOB domain profile. 69 171 IPR004883 -
Cme11g02516 269 PANTHER LOB DOMAIN CONTAINING PROTEIN 64 258 - -
Cme11g02516 269 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 64 258 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00253 Cme11g02516 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00914 Cme-Chr10:6680852 Cme11g02516 Cme-Chr11:31667442 2.73E-38 dispersed
Cme11g02516 Cme-Chr11:31667442 Cme10g01432 Cme-Chr10:17308943 3.07E-36 dispersed
Cme11g02516 Cme-Chr11:31667442 Cme11g02517 Cme-Chr11:31682796 3.03E-43 tandem
Cme04g01036 Cme-Chr4:14194325 Cme11g02516 Cme-Chr11:31667442 1.06E-44 transposed
Cme04g02065 Cme-Chr4:28030339 Cme11g02516 Cme-Chr11:31667442 3.73E-47 transposed
Cme11g02516 Cme-Chr11:31667442 Cme06g00253 Cme-Chr6:1538026 1.74E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42271 PF03195 LOB 3.60E-36 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02516 - - csv:101220840 427.172