Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02517 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGCACTGCCAGTGCCGGCGGGAGTGTCGGTGCCGGCGGAGGAGGTCCATGTGGGGCCTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCTCCTTATTTCGACTCCGAGCAAGGCGCAGCTCATTTCGCAGCGGTTCACAAGGTGTTCGGAGCTAGCAACGTCTCCAAGCTCCTCCTTCATATTCCCGTCCACAAACGTCTCGACGCCGTCGTCACTATTTGTTATGAAGCTCAAGCCCGCCTCCGAGACCCCGTATACGGTTGCGTTGCTCATATTTTCGCTCTTCAACAACAGTTATTAAGGAATTGGTCGGTGTACAGCCTTAAAGTTAAGCCCTTTGATTAG 396 54.04 MSANPSTSGGGGPGTASAGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQLLRNWSVYSLKVKPFD 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31682796 31684060 + MELO3C000068.2.1 Cme11g02517 343180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02517 131 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 117 - -
Cme11g02517 131 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 117 - -
Cme11g02517 131 Pfam Lateral organ boundaries (LOB) domain 29 116 IPR004883 -
Cme11g02517 131 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00253 Cme-Chr6:1538026 Cme11g02517 Cme-Chr11:31682796 1.40E-49 dispersed
Cme11g02517 Cme-Chr11:31682796 Cme02g02002 Cme-Chr2:26262460 9.65E-37 dispersed
Cme11g02516 Cme-Chr11:31667442 Cme11g02517 Cme-Chr11:31682796 3.03E-43 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42272 PF03195 LOB 1.30E-36 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02517 K21994 - zju:107435688 193.356