Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02517 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGCACTGCCAGTGCCGGCGGGAGTGTCGGTGCCGGCGGAGGAGGTCCATGTGGGGCCTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCTCCTTATTTCGACTCCGAGCAAGGCGCAGCTCATTTCGCAGCGGTTCACAAGGTGTTCGGAGCTAGCAACGTCTCCAAGCTCCTCCTTCATATTCCCGTCCACAAACGTCTCGACGCCGTCGTCACTATTTGTTATGAAGCTCAAGCCCGCCTCCGAGACCCCGTATACGGTTGCGTTGCTCATATTTTCGCTCTTCAACAACAGTTATTAAGGAATTGGTCGGTGTACAGCCTTAAAGTTAAGCCCTTTGATTAG | 396 | 54.04 | MSANPSTSGGGGPGTASAGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQLLRNWSVYSLKVKPFD | 131 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31682796 | 31684060 | + | MELO3C000068.2.1 | Cme11g02517 | 343180 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02517 | 131 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 1 | 117 | - | - | |
Cme11g02517 | 131 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 117 | - | - | |
Cme11g02517 | 131 | Pfam | Lateral organ boundaries (LOB) domain | 29 | 116 | IPR004883 | - | |
Cme11g02517 | 131 | ProSiteProfiles | LOB domain profile. | 28 | 130 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00253 | Cme-Chr6:1538026 | Cme11g02517 | Cme-Chr11:31682796 | 1.40E-49 | dispersed | |
Cme11g02517 | Cme-Chr11:31682796 | Cme02g02002 | Cme-Chr2:26262460 | 9.65E-37 | dispersed | |
Cme11g02516 | Cme-Chr11:31667442 | Cme11g02517 | Cme-Chr11:31682796 | 3.03E-43 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42272 | PF03195 | LOB | 1.30E-36 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02517 | K21994 | - | zju:107435688 | 193.356 |