Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02522 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTCTCCAAAGATCTCCATCTTCACCATGGATTATTCCACGCCCACCACCAAAACTCCGACGACGACCATACCCCCGGACCTAAGAGAGACAGGGACTCCGACGACAACCCCACTATGGACGACGACACCAAAGAATTGTCCAATTCTTCTTCTCGTCGCCCACGTGGCCGACCAGCCGGTTCCAAAAACAAGCCAAAGCCACCTATTATTATCACTAGAGACAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTCGATTCCCTCGCCACCTTCGCACGCCGTCGCCAGCGTGGTGTTTGTATTCTTAGCGCCACTGGAACCGTCGCCAACGTCACTCTCCGCCAGCCCGCTTCCCCCGGCGCTGTCATCACCTTACCCGGCAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCCCCGGCTCCCCCAGCCGCCTCCGGCCTCACCGTTTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTTATCGGCCCACTTTCGGCATCTGGACCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAGCGGTTACCTATTGATGATGAGGATGAAACTTCACCGGCGGCGGATCAGATGGCGGGACAACAGGCGGCAGCAGCAGCGCCGCCACCTCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGTATGGCGCAGAATGCTGTGAATTCTTCATGTCAATTGCCGGGGGAAGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 849 57.24 MDGITPHNRPLPPPFLSKDLHLHHGLFHAHHQNSDDDHTPGPKRDRDSDDNPTMDDDTKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLATFARRRQRGVCILSATGTVANVTLRQPASPGAVITLPGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDEDETSPAADQMAGQQAAAAAPPPQLLGDPNGGLFHGMAQNAVNSSCQLPGEAAAAFWGGGRPPY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31705602 31707141 + MELO3C000029.2.1 Cme11g02522 343185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02522 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Cme11g02522 282 MobiDBLite consensus disorder prediction 28 66 - -
Cme11g02522 282 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Cme11g02522 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 282 - -
Cme11g02522 282 CDD DUF296 95 206 IPR005175 -
Cme11g02522 282 Gene3D - 94 223 - -
Cme11g02522 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Cme11g02522 282 MobiDBLite consensus disorder prediction 219 249 - -
Cme11g02522 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 282 IPR014476 GO:0003680
Cme11g02522 282 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00517 Cme-Chr6:3249890 Cme11g02522 Cme-Chr11:31705602 8.97E-69 dispersed
Cme11g02481 Cme-Chr11:31446850 Cme11g02522 Cme-Chr11:31705602 1.18E-62 dispersed
Cme01g01906 Cme-Chr1:27461013 Cme11g02522 Cme-Chr11:31705602 4.74E-48 transposed
Cme11g02522 Cme-Chr11:31705602 Cme06g00250 Cme-Chr6:1512743 1.28E-81 wgd
Cme11g02522 Cme-Chr11:31705602 Cme09g01678 Cme-Chr9:21490222 5.75E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02522 - - csv:101220133 495.738