Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02531 | ATGGTGAGAGGAAAGACTCAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCGTGCAAAAACCAAAGAAGCCCTGGATCCTCCATTTGTCAATAATATTGTACAGTTGGAGCATTTTAATCATGAAGAAGCAGCTAGCCTGATAAAGAAAATAGAGCAACTCGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCCTTGATGAACTTCAACAACTTGAACATCAGTTGGAGAAAAGTGTTAGCAAAATAAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAGCTAAGGCAAAAGGAAAAAGTGTTGCAGGATGAAAATGCTAAACTACTTCAAAAGTGGGAAAGTGAGGGAGGAGATGGAGGAGTAAATAATGAAGGAGGAGAGAAAATGTTAAACTATGCAGAAAGTAGCAGTCCAAGTTCTGAGGTGGAGACTGAATTGTTGATTGGGCCACCCAGAAGATTTCTTTCCATTCACTGA | 666 | 40.24 | MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDLGSCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGGDGGVNNEGGEKMLNYAESSSPSSEVETELLIGPPRRFLSIH | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31756996 | 31766813 | + | MELO3C022515.2.1 | Cme11g02531 | 343194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02531 | 221 | Pfam | K-box region | 93 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme11g02531 | 221 | PANTHER | MADS BOX PROTEIN | 1 | 215 | - | - | |
Cme11g02531 | 221 | MobiDBLite | consensus disorder prediction | 176 | 207 | - | - | |
Cme11g02531 | 221 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | SUPERFAMILY | SRF-like | 3 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | ProSiteProfiles | K-box domain profile. | 91 | 181 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme11g02531 | 221 | Coils | Coil | 147 | 174 | - | - | |
Cme11g02531 | 221 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 215 | - | - | |
Cme11g02531 | 221 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | MobiDBLite | consensus disorder prediction | 192 | 206 | - | - | |
Cme11g02531 | 221 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | CDD | MADS_MEF2_like | 3 | 71 | IPR033896 | GO:0000977|GO:0045944 | |
Cme11g02531 | 221 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02531 | 221 | Coils | Coil | 125 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00227 | Cme-Chr6:1373704 | Cme11g02531 | Cme-Chr11:31756996 | 4.29E-74 | dispersed | |
Cme06g00949 | Cme-Chr6:6728550 | Cme11g02531 | Cme-Chr11:31756996 | 6.06E-58 | dispersed | |
Cme08g00728 | Cme-Chr8:4841959 | Cme11g02531 | Cme-Chr11:31756996 | 5.85E-41 | dispersed | |
Cme09g01472 | Cme-Chr9:19925518 | Cme11g02531 | Cme-Chr11:31756996 | 4.80E-53 | dispersed | |
Cme11g02531 | Cme-Chr11:31756996 | Cme11g02324 | Cme-Chr11:30303986 | 2.57E-45 | dispersed | |
Cme11g02531 | Cme-Chr11:31756996 | Cme11g02532 | Cme-Chr11:31767647 | 5.06E-47 | tandem | |
Cme11g02531 | Cme-Chr11:31756996 | Cme09g01706 | Cme-Chr9:21690768 | 3.04E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42273 | PF01486 | K-box | 6.20E-26 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02531 | - | - | csv:101217704 | 397.897 |