Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02531 ATGGTGAGAGGAAAGACTCAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCGTGCAAAAACCAAAGAAGCCCTGGATCCTCCATTTGTCAATAATATTGTACAGTTGGAGCATTTTAATCATGAAGAAGCAGCTAGCCTGATAAAGAAAATAGAGCAACTCGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCCTTGATGAACTTCAACAACTTGAACATCAGTTGGAGAAAAGTGTTAGCAAAATAAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAGCTAAGGCAAAAGGAAAAAGTGTTGCAGGATGAAAATGCTAAACTACTTCAAAAGTGGGAAAGTGAGGGAGGAGATGGAGGAGTAAATAATGAAGGAGGAGAGAAAATGTTAAACTATGCAGAAAGTAGCAGTCCAAGTTCTGAGGTGGAGACTGAATTGTTGATTGGGCCACCCAGAAGATTTCTTTCCATTCACTGA 666 40.24 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDLGSCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGGDGGVNNEGGEKMLNYAESSSPSSEVETELLIGPPRRFLSIH 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31756996 31766813 + MELO3C022515.2.1 Cme11g02531 343194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02531 221 Pfam K-box region 93 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme11g02531 221 PANTHER MADS BOX PROTEIN 1 215 - -
Cme11g02531 221 MobiDBLite consensus disorder prediction 176 207 - -
Cme11g02531 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Cme11g02531 221 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme11g02531 221 Coils Coil 147 174 - -
Cme11g02531 221 PANTHER MADS-BOX PROTEIN SOC1 1 215 - -
Cme11g02531 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 MobiDBLite consensus disorder prediction 192 206 - -
Cme11g02531 221 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cme11g02531 221 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Cme11g02531 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme11g02531 221 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00227 Cme-Chr6:1373704 Cme11g02531 Cme-Chr11:31756996 4.29E-74 dispersed
Cme06g00949 Cme-Chr6:6728550 Cme11g02531 Cme-Chr11:31756996 6.06E-58 dispersed
Cme08g00728 Cme-Chr8:4841959 Cme11g02531 Cme-Chr11:31756996 5.85E-41 dispersed
Cme09g01472 Cme-Chr9:19925518 Cme11g02531 Cme-Chr11:31756996 4.80E-53 dispersed
Cme11g02531 Cme-Chr11:31756996 Cme11g02324 Cme-Chr11:30303986 2.57E-45 dispersed
Cme11g02531 Cme-Chr11:31756996 Cme11g02532 Cme-Chr11:31767647 5.06E-47 tandem
Cme11g02531 Cme-Chr11:31756996 Cme09g01706 Cme-Chr9:21690768 3.04E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42273 PF01486 K-box 6.20E-26 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02531 - - csv:101217704 397.897