Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02532 | ATGGGAAGAGGAAGAGTAGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAGAGAAGAAACGGACTCCTAAAAAAAGCTTATGAACTCTCTGTTCTATGCGATGCTGAAGTTGCTTTGATCATCTTTTCCACTCGAGGCAAGCTCTACGAATTCGGCAGTGCTGGTACTTCCAAAACATTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAACACAATTTTGCTGAACGAGAAACCCAGAATTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGTCGCACTCACAGGCATTTGCTTGGGGAAGACCTAGGACCATTGAGTGTAAAGGAGCTCCAAAACCTTGAGAAGCAACTTGAAGCAGCCCTTTCTCAAGCTAGACAAAGGAAGACCCAGATTATGATTGAACAGATGGAAGATCTACGTAAAAAGGAGCTTCAACTTGGGAACCTCAACAGGGAGCTTAAGCTCAAGCTGGAAGCAGAGGGACAAAATGTTAGAGGAATAGAAAGTTTTTGGAGCTGTGCATCAGGATCCGCCTCCGGGCATCCCAACAACAACTTTCCATTGCATCATCCTTTACAACCTGACCCTATCGATTGCCAACACCAACCCCTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTCATGTCCAAAAGACCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA | 750 | 43.6 | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTSKTLERYQRCCFSPQHNFAERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALSQARQRKTQIMIEQMEDLRKKELQLGNLNRELKLKLEAEGQNVRGIESFWSCASGSASGHPNNNFPLHHPLQPDPIDCQHQPLLQIGYQNYFSEEGPSHVQKTMTCETNFIQGWVI | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31767647 | 31772520 | - | MELO3C022516.2.1 | Cme11g02532 | 343195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02532 | 249 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | Coils | Coil | 119 | 171 | - | - | |
Cme11g02532 | 249 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | PANTHER | MADS BOX PROTEIN | 1 | 232 | - | - | |
Cme11g02532 | 249 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR 17 | 1 | 232 | - | - | |
Cme11g02532 | 249 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme11g02532 | 249 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Cme11g02532 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme11g02532 | 249 | Pfam | K-box region | 82 | 169 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme11g02532 | 249 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00190 | Cme-Chr8:1304027 | Cme11g02532 | Cme-Chr11:31767647 | 4.84E-52 | dispersed | |
Cme11g02532 | Cme-Chr11:31767647 | Cme12g01921 | Cme-Chr12:25243840 | 1.99E-63 | dispersed | |
Cme11g02531 | Cme-Chr11:31756996 | Cme11g02532 | Cme-Chr11:31767647 | 5.06E-47 | tandem | |
Cme04g00496 | Cme-Chr4:3972168 | Cme11g02532 | Cme-Chr11:31767647 | 1.98E-31 | transposed | |
Cme04g01617 | Cme-Chr4:23450761 | Cme11g02532 | Cme-Chr11:31767647 | 1.49E-31 | transposed | |
Cme11g02532 | Cme-Chr11:31767647 | Cme06g00946 | Cme-Chr6:6703218 | 6.64E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42274 | PF01486 | K-box | 2.70E-28 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02532 | K09264 | - | csv:101219421 | 492.656 |