Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02532 ATGGGAAGAGGAAGAGTAGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAGAGAAGAAACGGACTCCTAAAAAAAGCTTATGAACTCTCTGTTCTATGCGATGCTGAAGTTGCTTTGATCATCTTTTCCACTCGAGGCAAGCTCTACGAATTCGGCAGTGCTGGTACTTCCAAAACATTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAACACAATTTTGCTGAACGAGAAACCCAGAATTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGTCGCACTCACAGGCATTTGCTTGGGGAAGACCTAGGACCATTGAGTGTAAAGGAGCTCCAAAACCTTGAGAAGCAACTTGAAGCAGCCCTTTCTCAAGCTAGACAAAGGAAGACCCAGATTATGATTGAACAGATGGAAGATCTACGTAAAAAGGAGCTTCAACTTGGGAACCTCAACAGGGAGCTTAAGCTCAAGCTGGAAGCAGAGGGACAAAATGTTAGAGGAATAGAAAGTTTTTGGAGCTGTGCATCAGGATCCGCCTCCGGGCATCCCAACAACAACTTTCCATTGCATCATCCTTTACAACCTGACCCTATCGATTGCCAACACCAACCCCTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTCATGTCCAAAAGACCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 750 43.6 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTSKTLERYQRCCFSPQHNFAERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALSQARQRKTQIMIEQMEDLRKKELQLGNLNRELKLKLEAEGQNVRGIESFWSCASGSASGHPNNNFPLHHPLQPDPIDCQHQPLLQIGYQNYFSEEGPSHVQKTMTCETNFIQGWVI 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31767647 31772520 - MELO3C022516.2.1 Cme11g02532 343195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02532 249 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Cme11g02532 249 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cme11g02532 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme11g02532 249 Coils Coil 119 171 - -
Cme11g02532 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme11g02532 249 PANTHER MADS BOX PROTEIN 1 232 - -
Cme11g02532 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme11g02532 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme11g02532 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme11g02532 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 232 - -
Cme11g02532 249 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme11g02532 249 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cme11g02532 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme11g02532 249 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme11g02532 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00190 Cme-Chr8:1304027 Cme11g02532 Cme-Chr11:31767647 4.84E-52 dispersed
Cme11g02532 Cme-Chr11:31767647 Cme12g01921 Cme-Chr12:25243840 1.99E-63 dispersed
Cme11g02531 Cme-Chr11:31756996 Cme11g02532 Cme-Chr11:31767647 5.06E-47 tandem
Cme04g00496 Cme-Chr4:3972168 Cme11g02532 Cme-Chr11:31767647 1.98E-31 transposed
Cme04g01617 Cme-Chr4:23450761 Cme11g02532 Cme-Chr11:31767647 1.49E-31 transposed
Cme11g02532 Cme-Chr11:31767647 Cme06g00946 Cme-Chr6:6703218 6.64E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42274 PF01486 K-box 2.70E-28 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02532 K09264 - csv:101219421 492.656