Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02537 ATGGCTGATAATCAGAAGCAAGAACTCGACGACGATGACGACTCTCCACCCACCCATCTCCGTATCAACGACTCCGATTCCTCTCGAATGGACCTTCTTCCCCTTACTCCCAAGCAGGAACATCCCGACTCCAACCTCCCTCACGACCTTCTCACTTTCAACCCGGATATCCCTAAAACCCTCTCATCTCTTCCCCCCAAGAGACCTTCCACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGCAGAATCCGAATTCCTGCCACCTGTGCCGCCCGTATCTTCCAGTTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCCGCCATCATCGCCGCTACTGGTACCGGTACCATTCCCGCCATTGCCATGTCTGTTAACGGCACTCTCAAAATCCCCACCACCACATCCTCTTCTAACCAAGATTCCGCCGATCCTTCCGCCGTCAAGAAACGTCGTAAGCGCCCAGCTAACAGTGACTACGTTGACGTAAATGACGCCCTCTCCGTCTCCATCTCCGCTTCGAACGTCGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCGCCGGGGTTCGTTCCAGTGTGGGCCATCCCTTCGAACGCCATAATTCCCGGAGCTGTTTTCATGGTTCCATCCGTGGCATGCTCTTCCACCCGTCCACAATTGTTCTCATTCTCGGCTCCGGCGGCACCGGTTATCAACACCACGGCGCGGCCAATTTCTGCGTTTCCGTCGAAGCCAGACACATCTCACATTCAATCCAGCCCTACCAACCAAAGCTCGAGCACATCAAGCTCCTCAGCTTCCAAATCTCAATCCGTCATGGCACCGATATCGAGCTCCAGCGTTCAGAGGAGCGGAAAAACGACGACGCAGATGCTTAGAGATTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGACACGGTCATCCTCAAAACATTGA 990 55.25 MADNQKQELDDDDDSPPTHLRINDSDSSRMDLLPLTPKQEHPDSNLPHDLLTFNPDIPKTLSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAVKKRRKRPANSDYVDVNDALSVSISASNVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFSAPAAPVINTTARPISAFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSSVQRSGKTTTQMLRDFSLEIYDKEELQFMTRSSSKH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31804195 31805184 - MELO3C022520.2.1 Cme11g02537 343200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02537 329 MobiDBLite consensus disorder prediction 252 302 - -
Cme11g02537 329 PANTHER TRANSCRIPTION FACTOR TCP9 21 327 - -
Cme11g02537 329 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 327 IPR005333 GO:0003700
Cme11g02537 329 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Cme11g02537 329 MobiDBLite consensus disorder prediction 1 26 - -
Cme11g02537 329 MobiDBLite consensus disorder prediction 144 170 - -
Cme11g02537 329 MobiDBLite consensus disorder prediction 1 81 - -
Cme11g02537 329 Pfam TCP family transcription factor 70 162 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02537 Cme-Chr11:31804195 Cme12g02008 Cme-Chr12:25710988 2.99E-37 dispersed
Cme06g02231 Cme-Chr6:29167155 Cme11g02537 Cme-Chr11:31804195 1.84E-38 transposed
Cme11g02537 Cme-Chr11:31804195 Cme06g00952 Cme-Chr6:6767274 1.25E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42275 PF03634 TCP 8.30E-30 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02537 - - csv:101218711 572.778