Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02549 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACTAACGCCAACAATAACCCCACCGGCGGCATCGGCGGCGGAGGAAATATGTCCTCCAGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCCCTCACGAAGTCGATGTTCAACTCCCCCGGACTCTCTCTCGCCCTTGTACTCATTTTTTTCCCTCTTTTTTTTCTTCGTTATTCATTTCGTTTATTCTTGTGTGTTGTTGTGCCAATTTCTAATGGCTTTGAAAATCCTCAGACGAACATGGACGGTGGGCAAGGAGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGGAGAGGCAGAGAGGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAAAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAGATGAAGACCCAATTGGAACGCCACGAGAATACTTTGCTTAGACAAGAGAATGATAAGCTTAGAGCTGAGAATATGTCAATTCGAGATGCTATGAGGAATCCAATCTGTTCAAACTGTGGTGGTCCGGCGATCATTGGTGAAATCTCCCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGTTGAAAGATGAATTGGACCGGGTTTGTGCACTCGCTGGGAAGTTTCTTGGCAGACCGATTTCATCGCTGGCTAACTCTATTGCACCTCCATTGCCGAGCTCAAGTTTGGAACTGGGAGTTGGGAGTAATGGGTTTGGTAGTTTGACCATGGCGACGTCAATGCCCATCGGGCCTGATTTTGGAGGTGGGTTGTCGGGTAATCTGGCTGTTGTTCAGGCACCTGCAAGACCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGATGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAGGAGTACATAAGGACATTTACTCCTTGCATTGGCATGAAACCAAACGGTTTTGTCACCGAGGCGTCAAGAGAAAGTGGCATGGTGATCATCAACAGCTTGGCTCTCGTGGAGACATTGATGGACTCGAATCGATGGGCTGAGATGTTTCCGTGTATGATCGCTCGAACCACGACAACTGATGTGATCTCCAATGGCATGGGGGGAACGAGGAACGGTGCGCTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTGCCCGTCCGGGAAGTCAATTTTCTGAGGTTCTGCAAGCAGCATGCTGAAGGGGTGTGGGCAGTCGTCGACGTGTCAGTAGATGCCATGAGAGAGACTCCAACCGGTGGTGGTTCATCGTTCGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTGCACCAGCTCTATCGTCCCCTACTCAGCTCCGGTATGGGCTTTGGAGCACAACGGTGGGTCACCACCCTTCAACGGCAATGTGAATGCCTTGCGATCCTCATGTCATCCGCTGTACCAATACGAGATCACACTGCCATAACCGCAGGCGGGCGGCGGAGCATGCTGAAGCTAGCCCAACGAATGACAGCCAACTTCTGTGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGATGTCCGTGTCATGACACGGAAGAGTGTGGATGATCCTGGAGAGCCTCCAGGCATTGTGTTGAGTGCCGCTACATCCGTGTGGCTCCCGGTATCGCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAGGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCAATGAATGCCAACCAGAGCAGTATGTTGATTTTACAAGAGACGTGCATAGACGCGGCGGGGTCGCTTGTGGTTTACGCGCCGGTGGACATTCCGGCGATGCACGTCGTGATGAACGGTGGGGATTCGGCCTATGTGGCGCTTCTGCCGTCAGGGTTTGCGATCGTCCCAGACGGGGCTGTGACAGGAGGTCTGACAGCGACAAATGGGAGCAGTCCAAGTGGCGGGGAGGGCCCACAGAGTCAGAGAGCGGCAGGCGGCGGGTCCCTCCTCACCGTTGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGCGAAACCTGA 2619 53.0 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGGGGNMSSSAIAPPRLITQSLTKSMFNSPGLSLALVLIFFPLFFLRYSFRLFLCVVVPISNGFENPQTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQAPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYIRTFTPCIGMKPNGFVTEASRESGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISNGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTGGGSSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTGGLTATNGSSPSGGEGPQSQRAAGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31886646 31891989 + MELO3C022532.2.1 Cme11g02549 343212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02549 872 Pfam START domain 374 600 IPR002913 GO:0008289
Cme11g02549 872 Pfam Homeodomain 166 221 IPR001356 GO:0003677
Cme11g02549 872 Coils Coil 217 249 - -
Cme11g02549 872 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 111 870 - -
Cme11g02549 872 Gene3D - 153 239 - -
Cme11g02549 872 ProSiteProfiles START domain profile. 365 603 IPR002913 GO:0008289
Cme11g02549 872 CDD START_ArGLABRA2_like 369 599 - -
Cme11g02549 872 MobiDBLite consensus disorder prediction 804 823 - -
Cme11g02549 872 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 111 870 IPR042160 -
Cme11g02549 872 MobiDBLite consensus disorder prediction 127 173 - -
Cme11g02549 872 Coils Coil 264 284 - -
Cme11g02549 872 MobiDBLite consensus disorder prediction 127 146 - -
Cme11g02549 872 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Cme11g02549 872 SMART START_1 374 600 IPR002913 GO:0008289
Cme11g02549 872 CDD homeodomain 165 223 IPR001356 GO:0003677
Cme11g02549 872 SUPERFAMILY Bet v1-like 367 600 - -
Cme11g02549 872 SUPERFAMILY Bet v1-like 628 865 - -
Cme11g02549 872 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Cme11g02549 872 SUPERFAMILY Homeodomain-like 148 223 IPR009057 -
Cme11g02549 872 SMART HOX_1 164 227 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00416 Cme-Chr1:2932684 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme01g02704 Cme-Chr1:34346522 Cme11g02549 Cme-Chr11:31886646 3.51E-180 dispersed
Cme04g01106 Cme-Chr4:15056994 Cme11g02549 Cme-Chr11:31886646 5.80E-99 dispersed
Cme08g00387 Cme-Chr8:2409975 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme11g00781 Cme-Chr11:9888700 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme11g02549 Cme-Chr11:31886646 Cme12g01470 Cme-Chr12:22385995 0 dispersed
Cme04g00141 Cme-Chr4:1059325 Cme11g02549 Cme-Chr11:31886646 0 transposed
Cme06g01438 Cme-Chr6:13380875 Cme11g02549 Cme-Chr11:31886646 0 transposed
Cme12g02041 Cme-Chr12:25897226 Cme11g02549 Cme-Chr11:31886646 0 transposed
Cme11g02549 Cme-Chr11:31886646 Cme06g00978 Cme-Chr6:6946483 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42276 PF01852 START 1.50E-57 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02549 K09338 - csv:101222248 1551.18