Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00002 ATGTGTCGTCGATCACAGCAGTGGGCTTATGTAGCCCTTCTGCTCCTCTGCTTCTCGTCGTCCTTACTAATTGTTGTTGCAGCAGAAATGGGTACCCACCCCTCTGAAGTGGACGCTTTGCTACTCATCAAAAGAAGTTTGTTCGATCCTAATGGGAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAATTCAAACTGGACTGGTGTTCTGTGCTACAATACGACATTGGATGATAACTATCTACATGTTGCTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAAATTGTCACCAGCGCTCGGCCGTTTATCTTACCTGAGAGTTTTGGACTTTATGTGGAATGAGATAAGTGGGGAAATACCAAGAGAGATAGGCAACCTAATGTCCTTAGAACTGTTGCTTCTGAACGGGAACCGGTTGTCAGGTTCATTGCCTGAAGATCTTGGTAATCTTCTACATTTAGACAGAATACAGATTGACCAGAACCATATATCAGGACCAATACCCAAGTCTTTTGCAAACTTAAAAGCAACAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCGTCTGAGCTATCTGAATTGCCCAATCTTGTTCACTTCCTTCTTGACAACAACAACTTGACGGGGAAACTTCCTCCTGAGTTGTTTCAATTGCCAAATTTAGAAATACTTCAACTTGACAACAACGACTTCAGCGGGGCCACAATACCAGATTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGGTCAATTCCTGATCTGAGCAGAATAAAGAACCTCGGTTATCTAGATTTAAGTTCCAATCAACTAAGTGGATTGATTCCTCGAAGTAAACTCTCTGAGAATATCACAACCATCATCTTATCCGACAACCGTCTAACTGGCACCATACCATCCAGTCTTTCGGGTTTACCACATCTTCAAAAATTGTCAGTTGCAAATAATTCATTGAATGGCTCTGTCCCATCCACCATATGGCAAAGCAGGACGCTCAATTCTCTGGATAGTCTTACAGTAGAGTTGCAGAACAATAATTTTTCAGATATTTTGGGAAGCATTCATCTCCCTCTGAATGTTTCTGTCTGGCTTCATGGAAATCCCGCTTGTGCTAATAACAGCCTGCTGGACTTTTGTGGATCTGAGAGTGAGGATATAATTGACATTCCAACAAATAACTCTCTTGGTTGTTCTGGCCCAATATGCCCACCTTCTTACGAATGTTACTCAGCAAAATGCCCGTCATCTTGTATCTGTTCTGCACCTCTTCTAATTGGATATCGTTTAAAAAGTCCTGGATTCTCACATTTCAGTCCATATCAACTTATGTTTGAGGAATATCTCACCAGTGGTCTTAAGGTACATCTTGAACAATTGGACATTGGTTCTGCTGTGTGGGAAAAAGGTCCTCGATTAAGAATGAGCCTAAAGCTTTTCCCTCTTTATGTTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGTGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGACAGTGATATATTTGGACCGTATGAACTTCTCAGCTTGACAATATCCGACGTTTATAAGAAGGTATTTATCACACCATCGTCTGATTCTACTATGAGTAAAGGGGCATTGGCGGGAATAATATTAGGAGCAATAGCTGGTGGAGCAATGCTATCTGCAATTGTTTTTATTTTTATCATAAGATCACGTATGAGGGGCCACCACATCTCAAGAAGGCGTCATTTGTCAAAAACCTCCATAAAGATAGAGGGCGTTAAGGAATATGGTTATCGTGAAATGGCCCTAGCTACAAACAATTTTCATTGTTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACGGCTGTTGCTATCAAACGTGCACAGGAGGGCTCACTGCAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTACTCTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGATATTGCGATGAAGAAGGGGAGCAGATGTTGGCTTATGAATTTATGTCAAATGGCTCGCTGAGGGACCACCTTTCTGTAAATTCTGCAGAACCCTTGAGTTTTGCCACAAGATTAAAAGCCGCCTTGGGTGCAGCTAAGGGAATTCTGTACCTGCATACGGAAGCTGATCCTCCAATATTCCATCGAGATATCAAGTCCAGCAATATATTATTAGATTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTTTACCCAATGCAGAAGGCGACGTGCCTGCTCATGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGTGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACGGTGCATATCAGTCCGGGAAAATTTTCTCCATAATTGATGGTCGACTGGGTTCTTATCCTGCTGAATGTGTAGAAAAATTCGTGACACTTGCTTTGAAGTGTTGCCAAGATGATACAGATGCACGCCCTTCAATGGTAGAAGTTGTGCGAACGCTTGAAAGTATCTGGCTTATGCTGCCCGAGTCCGATACGAAAATTTCAGAGCCTTTGATCACCGATGTCATAAAAGTGACCAGTCCCCCATCTTCATCATCCAATATGAACTATTACATATCAGAAGTCTCTGGTAGCGATCTCGTGAGTGGAGTAACTCCCACCATCATGCCCAGATAG 2859 41.55 MCRRSQQWAYVALLLLCFSSSLLIVVAAEMGTHPSEVDALLLIKRSLFDPNGNLSNWNKGDPCNSNWTGVLCYNTTLDDNYLHVAELQLLNMSLSGKLSPALGRLSYLRVLDFMWNEISGEIPREIGNLMSLELLLLNGNRLSGSLPEDLGNLLHLDRIQIDQNHISGPIPKSFANLKATKHFHMNNNSISGEIPSELSELPNLVHFLLDNNNLTGKLPPELFQLPNLEILQLDNNDFSGATIPDSYGNMTKLLKLSLRNCTLQGSIPDLSRIKNLGYLDLSSNQLSGLIPRSKLSENITTIILSDNRLTGTIPSSLSGLPHLQKLSVANNSLNGSVPSTIWQSRTLNSLDSLTVELQNNNFSDILGSIHLPLNVSVWLHGNPACANNSLLDFCGSESEDIIDIPTNNSLGCSGPICPPSYECYSAKCPSSCICSAPLLIGYRLKSPGFSHFSPYQLMFEEYLTSGLKVHLEQLDIGSAVWEKGPRLRMSLKLFPLYVADSNSSHMFNDSEVLRIVSKFTNWKIQDSDIFGPYELLSLTISDVYKKVFITPSSDSTMSKGALAGIILGAIAGGAMLSAIVFIFIIRSRMRGHHISRRRHLSKTSIKIEGVKEYGYREMALATNNFHCSTVVGQGGYGKVYKGILADSTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGSLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPNAEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNGAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQDDTDARPSMVEVVRTLESIWLMLPESDTKISEPLITDVIKVTSPPSSSSNMNYYISEVSGSDLVSGVTPTIMPR 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 55338 99523 - MELO3C020478.2.1 Cme12g00002 343219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00002 952 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Cme12g00002 952 CDD STKc_IRAK 631 897 - -
Cme12g00002 952 Gene3D Ribonuclease Inhibitor 296 385 IPR032675 -
Cme12g00002 952 Gene3D Transferase(Phosphotransferase) domain 1 701 907 - -
Cme12g00002 952 SMART serkin_6 625 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00002 952 Pfam Protein kinase domain 627 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00002 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 929 - -
Cme12g00002 952 SUPERFAMILY L domain-like 48 413 - -
Cme12g00002 952 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Cme12g00002 952 ProSiteProfiles Protein kinase domain profile. 625 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00002 952 Gene3D Ribonuclease Inhibitor 189 295 IPR032675 -
Cme12g00002 952 Gene3D Phosphorylase Kinase; domain 1 596 700 - -
Cme12g00002 952 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 16 929 - -
Cme12g00002 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Cme12g00002 952 SUPERFAMILY Protein kinase-like (PK-like) 611 930 IPR011009 -
Cme12g00002 952 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Cme12g00002 952 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515
Cme12g00002 952 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Cme12g00002 952 SMART LRR_typ_2 129 153 IPR003591 -
Cme12g00002 952 SMART LRR_typ_2 320 344 IPR003591 -
Cme12g00002 952 SMART LRR_typ_2 201 225 IPR003591 -
Cme12g00002 952 SMART LRR_typ_2 273 298 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01793 Cme-Chr4:25620676 Cme12g00002 Cme-Chr12:55338 5.01E-11 dispersed
Cme04g02800 Cme-Chr4:33066024 Cme12g00002 Cme-Chr12:55338 1.54E-154 dispersed
Cme12g00002 Cme-Chr12:55338 Cme01g01524 Cme-Chr1:20193869 9.60E-94 dispersed
Cme12g00002 Cme-Chr12:55338 Cme08g02076 Cme-Chr8:26158878 6.05E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65290 PF00069 Pkinase 2.50E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00002 - - csv:101208136 1767.67