Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00007 ATGGATCTTCTCCTGTTGGAGAAGGCTTTAGTGGGGATGTTTGTGACCATTGTTGTTGCCATTAGCATATCCAAGATCAAGGGGAAGCGTTTTAACCTCCCACCAGGCCCCATTCCCATCCCCATATTTGGAAATTGGCTACAAGTGGGGGATGACTTGAACCATCACAACTTGAGAGAGTTGGCCAAAAGATTCGGTGACATATTGTTGTTGAGAATGGGACAACGAAACTTGGTGGTTGTTTCCTCGCCAGAGTTGGCCAAAGAAGTGCTCCACACCCAGGGAGTAGAGTTTGGGTCTAGGACTAGGAACGTTGTGTTCGATATATTCACAGATAAGGGTCAAGATATGGTGTTCACAGTGTATGGAGAGCATTGGAGGAAAATGAGGCGAATCATGACGGTCCCTTTTTTCACCAACAAGGTGGTCCAACAAAATAGGTTGGGTTGGGAGGAGGAGGCTGCCATAGTTGTGGAGGATTTAAGAAACAATCTAGAGGCCTCCACCACAGGCGTGGTTCTCAGGAAGCGGTTACAACTTCTAATGTATAACAATATGTATAGGATGATGTTTGACAAGAGATTTGACAACATGGAGGACCCTCTATTCAACAAACTCAAGCTTATTAATGCAGAGAGGAGTCGATTATCTCAGAGCTTTGATTATAACTATGGTGATTTCATCCCTATACTCAGGCCTTTCCTTACAAGGTATTTGAATAACTGTAAGGACGTCAAGGAGAGGAGGCTTAGGCTTTTCAAGGACCATTTTGTCGATGAGAGGAGGAGACTGACTGGCACCATGAGCAAGAAGAAGTTGGTTGGTGGTGTAAAATGTGCTATTGATCATATTGTGGAGGCTCAAGAGAATGGTGAAATCACCGAAGACAATGTTCTCTTTATTGTAGAGAACATAAATGTTGCTGCTATTGAGACAACATTGTGGTCCATGGAGTGGGCTATAGCTGAGCTAGTTAACCATCCAAACATCCAGAGCAAAGTGAGGGATGAGCTCGATTCGGTACTCAAAGATGGCGTTCAGATTACAGAGCCGGACATTCGAAATTTGCCTTACTTGCAGGCTGTAATCAAGGAGACTTTGCGGTTAAGAATGGCCATTCCTCTATTAGTGCCTCACATGAATCTTCAAGATGCCAAGTTGGGTGGTTATGACATTCCTGCAGAAAGCAAGATTCTAGTGAATGCATGGTGGCTGGCCAACAACCCTGATCATTGGAACAAACCCCAAGAATTTCGACCTGAGAGGTTCTTGGAAGAGGAGGAAAACGTAGAGCCTAGTGGGAATGACTTTAGATACCTTCCCTTCGGTGCTGGGAGGAGGAGCTGTCCTGGCATTATTCTCGCTTTGCCCATCCTTGCTATTACTTTGGGTCGTCTTCTTCAGAATTTTGAGCTCATGCCTCCTCCTGGACAATCCAAGATTGATACCACCGAAAAGCCTGGACAGTTTAGCTTACAAATATTCAATCACTCTACTATTGTGGCAAAACCAAGGTCTTTGTGA 1524 44.69 MDLLLLEKALVGMFVTIVVAISISKIKGKRFNLPPGPIPIPIFGNWLQVGDDLNHHNLRELAKRFGDILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTDKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRLGWEEEAAIVVEDLRNNLEASTTGVVLRKRLQLLMYNNMYRMMFDKRFDNMEDPLFNKLKLINAERSRLSQSFDYNYGDFIPILRPFLTRYLNNCKDVKERRLRLFKDHFVDERRRLTGTMSKKKLVGGVKCAIDHIVEAQENGEITEDNVLFIVENINVAAIETTLWSMEWAIAELVNHPNIQSKVRDELDSVLKDGVQITEPDIRNLPYLQAVIKETLRLRMAIPLLVPHMNLQDAKLGGYDIPAESKILVNAWWLANNPDHWNKPQEFRPERFLEEEENVEPSGNDFRYLPFGAGRRSCPGIILALPILAITLGRLLQNFELMPPPGQSKIDTTEKPGQFSLQIFNHSTIVAKPRSL 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 134366 136239 + MELO3C020483.2.1 Cme12g00007 343224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00007 507 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 506 - -
Cme12g00007 507 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 506 - -
Cme12g00007 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Cme12g00007 507 SUPERFAMILY Cytochrome P450 34 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 Pfam Cytochrome P450 34 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00007 507 Gene3D Cytochrome P450 20 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01682 Cme-Chr11:24892758 Cme12g00007 Cme-Chr12:134366 0 dispersed
Cme12g00007 Cme-Chr12:134366 Cme04g02123 Cme-Chr4:28556816 1.10E-89 dispersed
Cme12g00007 Cme-Chr12:134366 Cme12g01642 Cme-Chr12:23549666 9.71E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00007 K00487 - csv:101208511 955.281