Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00027 ATGGAACCAAAGTGCAGCAACTTGTGGTGTGTTTTGGTGTTTGCTTCATTAATGGCAACTTTGAGCTCTGGCAGTTTATCTGCAAAGTACTATGCGAGTACATGTCCAAAGTTACTTTCTATTGTCCGAAGTGAAGTCGTGAAAGCAGTAGATAAAGAGTATAGAATGGGAGCATCGTTGCTTCGCCTTCATTTTCACGATTGCTTTGTCAATGGATGTGATGCGTCGGTACTGTTGGATGACACATCAAACTTTACAGGAGAAAAAACAGCGATTCCGAACAAAGATTCACTAAGAGGTTTTGAAGTGATCGATTCAATAAAAACGCTGGTGGAGGCTGCTTGTCCTTCTGTGGTTTCTTGTGCTGATATTTTGTCCCTTGCAGCTCGGGATTCTGTGGTTGCACTTGGAGGGCCTTCGTGGGTAGTCGGACTTGGGCGGAGGGACTCAACCACAGCCAGCTTCGACAACGCAAACAATGACCTTCCTTCTCCCTTCCTCGACCTTCCCGATCTCATCTCTGCCTTTTCTAACAAAGGCTTCGACACCAAAGAATTGGTCGCCCTTTCAGGATCTCACACCATTGGACAAGCAAGGTGCTCGATGTTCAGAGTAAGGGCTCATAACGAAACAACCACCATTGATCCAGATTTTGCAGCGTCTCTAAGAACCAACTGCCCATTCTCCGGCGACGATCAAAATCTTTCCCCTTTGGATCTCAAGACTCAATCCTTATTCGACAACGCCTATTTCAAAAATTTGGTCCAAAACAAAGGCCTTCTTCACTCCGATCAAGCTCTCTTCACCAACTCCTCCGCCGATTCTCATGTCAGTTCCTACATCTCCGACCCTAAAGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTTAAGATGTCCAACCTCTCCCCTCTCACCGGCTCCGACGGCCAGATTCGCTCCGACTGCCGTAAAATCAATTAA 960 47.08 MEPKCSNLWCVLVFASLMATLSSGSLSAKYYASTCPKLLSIVRSEVVKAVDKEYRMGASLLRLHFHDCFVNGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDSIKTLVEAACPSVVSCADILSLAARDSVVALGGPSWVVGLGRRDSTTASFDNANNDLPSPFLDLPDLISAFSNKGFDTKELVALSGSHTIGQARCSMFRVRAHNETTTIDPDFAASLRTNCPFSGDDQNLSPLDLKTQSLFDNAYFKNLVQNKGLLHSDQALFTNSSADSHVSSYISDPKAFFSDFAAAMVKMSNLSPLTGSDGQIRSDCRKIN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 346200 348223 + MELO3C020501.2.1 Cme12g00027 343244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00027 319 Gene3D - 29 319 - -
Cme12g00027 319 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Cme12g00027 319 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cme12g00027 319 PANTHER PEROXIDASE 72-RELATED 19 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 Pfam Peroxidase 42 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 Gene3D Peroxidase, domain 2 163 298 - -
Cme12g00027 319 ProSiteProfiles Plant heme peroxidase family profile. 25 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PANTHER PEROXIDASE 19 319 - -
Cme12g00027 319 CDD secretory_peroxidase 26 318 IPR033905 GO:0004601|GO:0042744
Cme12g00027 319 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g00027 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01703 Cme-Chr11:25097787 Cme12g00027 Cme-Chr12:346200 5.87E-126 dispersed
Cme11g01704 Cme-Chr11:25097947 Cme12g00027 Cme-Chr12:346200 5.76E-126 dispersed
Cme11g01706 Cme-Chr11:25129958 Cme12g00027 Cme-Chr12:346200 1.44E-123 dispersed
Cme11g01707 Cme-Chr11:25141332 Cme12g00027 Cme-Chr12:346200 2.20E-124 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00027 K00430 - csv:101221157 599.742