Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00035 ATGTCCACCACCCAGAATCCTGAACTTGTTTGTGTCACCGGCGCCAGTGGCTGTATCGGATCCTGGCTCGTTCACCTCCTTCTCCTCCGCGGCTACTCCGTCCACGCCACCGTTCAAAATCTCAAGGACGAGGCCGAAACCAAGCATCTGCAGGATTTAGAAGGAGCGGATCCTCGTCTTCGTCTCTTCCAAATTGACCTTCTCGATTATGATTCCATTGTCCCCGCTGTCACTGGTTGTGCTGGTGTCTTCCACGTTGCGTCTCCTTGCATTGTTGATGCTGTTGAGGATCCTCAGAGGGATCTATTGGATCCGGCTATCAAAGGAACCATCAACGTCCTGACGGTGGCTAAGGAGGCTGGGGTACGGCGTGTGGTGGTGACTTCTTCTATCTCCGCCATGATTCCGAACCCTAACTGGCCGGCGAATGTTGTAAGGAATGAAGAAAGCTGGACCGATGTTGATTACTGCAAGCAAAGGGGGCTGTGGTATCCAATTTCAAAAACTCTAGCGGAAAAGGCTGCTTGGGATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTCATGGGTCCTGTGTTTCCTCCCAGAATCAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGGTGCAGCGAGACATACGCGGATGTGTTTATCGGAGTAGTGCACTTTAAAGATGTTGCATTAGCACACATTTTGGTGTATGAGAACAAATCAGCTACAGGAAGACACTTTTGTGCCGAGTCCATAGCTCGTTACTCCGACTATGTAGCGAAGGCTGCTGAGCTCTTTCCTCAGTATAAGGTGCCCAGATCGATAGAAGATTCACAGCCTGATTTGGTGAGAGCAAAAGATGGAGCTAAGAAGTTGATGAACCTGGGGTTGGAATTCATTCCAATGGAACAAATCCTCAAGGACGCCGTTGAGTATCTAAAAAAGAAGGGATATATTTCTTGA 978 48.67 MSTTQNPELVCVTGASGCIGSWLVHLLLLRGYSVHATVQNLKDEAETKHLQDLEGADPRLRLFQIDLLDYDSIVPAVTGCAGVFHVASPCIVDAVEDPQRDLLDPAIKGTINVLTVAKEAGVRRVVVTSSISAMIPNPNWPANVVRNEESWTDVDYCKQRGLWYPISKTLAEKAAWDFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLEGCSETYADVFIGVVHFKDVALAHILVYENKSATGRHFCAESIARYSDYVAKAAELFPQYKVPRSIEDSQPDLVRAKDGAKKLMNLGLEFIPMEQILKDAVEYLKKKGYIS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 396265 399523 + MELO3C020508.2.1 Cme12g00035 343252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00035 325 Pfam NAD dependent epimerase/dehydratase family 10 252 IPR001509 -
Cme12g00035 325 Gene3D - 2 325 - -
Cme12g00035 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 319 IPR036291 -
Cme12g00035 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 316 - -
Cme12g00035 325 CDD FR_SDR_e 10 302 - -
Cme12g00035 325 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00170 Cme-Chr5:1150440 Cme12g00035 Cme-Chr12:396265 2.97E-83 dispersed
Cme06g02219 Cme-Chr6:28634843 Cme12g00035 Cme-Chr12:396265 3.11E-114 dispersed
Cme07g00021 Cme-Chr7:183156 Cme12g00035 Cme-Chr12:396265 6.72E-81 dispersed
Cme11g01016 Cme-Chr11:14563385 Cme12g00035 Cme-Chr12:396265 9.58E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00035 - - csv:101204420 636.721