Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00048 AACCTTCTTTTTCTTCTCTCTCGCATTTTCTCAAATACTTTCTTTCTACTCCATTTCCAATGCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCCCCTTCCTCTTTGATTCTTCTTCCTTCATTCCAATGGTTGACAATGGCGAAGAGAAGTTGCTGGCTATGGCTCGCCACATAGCCAAGACCATGGGTCGCAACGAATCCATGGCCGATGATATTCTCCAGATTTTCTCCAATTTTGATGCTAGGTTTTCCCTCGATAAGCTCTCTGATAAACCCGATGAGCTTGATCCCAGAGCTCCCACCGCCTTACAGCGCTCTCTCAAGTCTTTAGACCGCCGGATCTCCCAATACTTGGCTGCCGACCACCCCATTTGGGCTGATTCCGCTGATTCCTCTGCTTTTCTCGACTCTATTGATGAGTTGTTGGGTATCATTAGGGACTGGGCTCCTATGGCTAGGGATAAGTCTGTTGCTTCCTATCTTGCTCGTGCTGACGATCTGATGCAGCAGGCTATGTTCCGTGTCGACCAAGAGTTCCGGTCGTTGATGGACCGTGGAGGTGAGTCTTTTGAATTGACTCGCCATTTCAGGAACGGTGAGTCAACGGGGGATTTCTGTTTTGATTCCGAGGAAGATGAGGAAGGTGCGGAGGGAATTCTGGGCGATGGCGACGGTATCCAGATCCCCGTGGCGCAGCCGGTGACGGATTACAACATCCTTATTGATGCGCTTCCGTCCGGGACTATCAACGATCTCCATGAAATAGCGAAGCGTATGGTAGCGGCTGGGTTTGAGAAAGAGTGTTCACATGCTTATAGTAGCTGCAGGAGGGAGTTCTTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAGATGCAATGGCAAGACCTCGAAGAGGAGATTGAGCGGTGGATGAAAGCGATTACCCTCTCTCTTCGAATTCTCTTCCCAAGCGAACGACGCCTATGTGAACGTGTCTTCGTCGGCCTCTCCACCACCGCCGATCTTTCTTTCATGGAAGTCTGCCGAGGATCCACTATTCAGCTATTGAATTTTGCAGATGCGGTGGCAATTGGCTCCCGCGCGCCGGAACGATTGTTCAAAATCCTCGATATGTTTGAGACCTTGAGAGACTTGATGCCGGAGTTCGATTCGGTATTTTCAGATCAGTACTGCTTGTTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAAGGTATTTTCATGGAGCTTGAGAATTTGATCCGCCGTGATCCGGCTAAAACTCCGGTCCCTGGGGGTGGTCTTCATCCAATCACTCGATACGTGATGAATTACCTTAGAGCAGCTTGCAAATCCCGGCAGACTTTGGAGCAAGTTTTTGACGAACCTGCCCTTCCGTCTGAAAGAGCAGCAGCGTCGTCTTCCTTATCTGTTCAGATGGAGTGGATTATGGAGCTTTTAGAGAGCAATTTAGAAGCAAAGTCGAAAATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGGAGATACATTGTTCAGAAAGTGAAAGACAGTGATTTAGGATCCGTTTTAGGAGACGATTGGATTCGAAAACACTCGGTTAAGAACCGACAATACCTCGGAAACTACCTGAAAAGCTCATGGAGCAAGGTGGTGGGAGCATTGAAAATGGACAGTGGCACTTTAGCTCCGACTGTGATGAAGGAGAAGCTTCAATCATTCAATATGCAGTTCGAAGAAATCTGCCAAACCCAATCCACATGGGTGATATTTGAGAATCAGCTCAGAGAGGAAACAAGAATCTCAGTTGCCAAAATCCTTTTGCCAGCATATCAAAAGTTCATAGGGAGGTACCAGAGTTTGCCGGAGTTGGCAAAGCGTACAGATCGGTATTTGAAGTACACTGCAGAGGAAATGGAGGCTCGAATCAACGAGCTGTTCGAAGGCGGCAACTCAGGCAGTGGAAGGAGGTAA 2019 47.35 NLLFLLSRIFSNTFFLLHFQCFFFFFFFFFFLLFPFLFDSSSFIPMVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKPDELDPRAPTALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDSIDELLGIIRDWAPMARDKSVASYLARADDLMQQAMFRVDQEFRSLMDRGGESFELTRHFRNGESTGDFCFDSEEDEEGAEGILGDGDGIQIPVAQPVTDYNILIDALPSGTINDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWQDLEEEIERWMKAITLSLRILFPSERRLCERVFVGLSTTADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPEFDSVFSDQYCLLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLRAACKSRQTLEQVFDEPALPSERAAASSSLSVQMEWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSDLGSVLGDDWIRKHSVKNRQYLGNYLKSSWSKVVGALKMDSGTLAPTVMKEKLQSFNMQFEEICQTQSTWVIFENQLREETRISVAKILLPAYQKFIGRYQSLPELAKRTDRYLKYTAEEMEARINELFEGGNSGSGRR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 469752 472193 + MELO3C020519.2.1 Cme12g00048 343265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00048 672 PANTHER EXOCYST COMPLEX PROTEIN EXO70 74 663 IPR004140 GO:0000145|GO:0006887
Cme12g00048 672 SUPERFAMILY Cullin repeat-like 128 663 IPR016159 -
Cme12g00048 672 Pfam Exo70 exocyst complex subunit 313 660 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme12g00048 672 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 74 663 - -
Cme12g00048 672 Gene3D Exocyst complex component Exo70 127 672 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00048 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204511 1201.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01028 Cme-Chr9:14417486 Cme12g00048 Cme-Chr12:469752 5.03E-130 dispersed
Cme12g00048 Cme-Chr12:469752 Cme12g01592 Cme-Chr12:23218332 4.93E-125 dispersed
Cme12g00048 Cme-Chr12:469752 Cme11g01259 Cme-Chr11:19404241 1.29E-83 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00048 Cme_Chr12 FPKM 1.109589 1.470118 0.280661 0.523423 0.328416 0.25828 0.596112 0.215481 0.268298 0.091968