Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00048 AACCTTCTTTTTCTTCTCTCTCGCATTTTCTCAAATACTTTCTTTCTACTCCATTTCCAATGCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCCCCTTCCTCTTTGATTCTTCTTCCTTCATTCCAATGGTTGACAATGGCGAAGAGAAGTTGCTGGCTATGGCTCGCCACATAGCCAAGACCATGGGTCGCAACGAATCCATGGCCGATGATATTCTCCAGATTTTCTCCAATTTTGATGCTAGGTTTTCCCTCGATAAGCTCTCTGATAAACCCGATGAGCTTGATCCCAGAGCTCCCACCGCCTTACAGCGCTCTCTCAAGTCTTTAGACCGCCGGATCTCCCAATACTTGGCTGCCGACCACCCCATTTGGGCTGATTCCGCTGATTCCTCTGCTTTTCTCGACTCTATTGATGAGTTGTTGGGTATCATTAGGGACTGGGCTCCTATGGCTAGGGATAAGTCTGTTGCTTCCTATCTTGCTCGTGCTGACGATCTGATGCAGCAGGCTATGTTCCGTGTCGACCAAGAGTTCCGGTCGTTGATGGACCGTGGAGGTGAGTCTTTTGAATTGACTCGCCATTTCAGGAACGGTGAGTCAACGGGGGATTTCTGTTTTGATTCCGAGGAAGATGAGGAAGGTGCGGAGGGAATTCTGGGCGATGGCGACGGTATCCAGATCCCCGTGGCGCAGCCGGTGACGGATTACAACATCCTTATTGATGCGCTTCCGTCCGGGACTATCAACGATCTCCATGAAATAGCGAAGCGTATGGTAGCGGCTGGGTTTGAGAAAGAGTGTTCACATGCTTATAGTAGCTGCAGGAGGGAGTTCTTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAGATGCAATGGCAAGACCTCGAAGAGGAGATTGAGCGGTGGATGAAAGCGATTACCCTCTCTCTTCGAATTCTCTTCCCAAGCGAACGACGCCTATGTGAACGTGTCTTCGTCGGCCTCTCCACCACCGCCGATCTTTCTTTCATGGAAGTCTGCCGAGGATCCACTATTCAGCTATTGAATTTTGCAGATGCGGTGGCAATTGGCTCCCGCGCGCCGGAACGATTGTTCAAAATCCTCGATATGTTTGAGACCTTGAGAGACTTGATGCCGGAGTTCGATTCGGTATTTTCAGATCAGTACTGCTTGTTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAAGGTATTTTCATGGAGCTTGAGAATTTGATCCGCCGTGATCCGGCTAAAACTCCGGTCCCTGGGGGTGGTCTTCATCCAATCACTCGATACGTGATGAATTACCTTAGAGCAGCTTGCAAATCCCGGCAGACTTTGGAGCAAGTTTTTGACGAACCTGCCCTTCCGTCTGAAAGAGCAGCAGCGTCGTCTTCCTTATCTGTTCAGATGGAGTGGATTATGGAGCTTTTAGAGAGCAATTTAGAAGCAAAGTCGAAAATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGGAGATACATTGTTCAGAAAGTGAAAGACAGTGATTTAGGATCCGTTTTAGGAGACGATTGGATTCGAAAACACTCGGTTAAGAACCGACAATACCTCGGAAACTACCTGAAAAGCTCATGGAGCAAGGTGGTGGGAGCATTGAAAATGGACAGTGGCACTTTAGCTCCGACTGTGATGAAGGAGAAGCTTCAATCATTCAATATGCAGTTCGAAGAAATCTGCCAAACCCAATCCACATGGGTGATATTTGAGAATCAGCTCAGAGAGGAAACAAGAATCTCAGTTGCCAAAATCCTTTTGCCAGCATATCAAAAGTTCATAGGGAGGTACCAGAGTTTGCCGGAGTTGGCAAAGCGTACAGATCGGTATTTGAAGTACACTGCAGAGGAAATGGAGGCTCGAATCAACGAGCTGTTCGAAGGCGGCAACTCAGGCAGTGGAAGGAGGTAA 2019 47.35 NLLFLLSRIFSNTFFLLHFQCFFFFFFFFFFLLFPFLFDSSSFIPMVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKPDELDPRAPTALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDSIDELLGIIRDWAPMARDKSVASYLARADDLMQQAMFRVDQEFRSLMDRGGESFELTRHFRNGESTGDFCFDSEEDEEGAEGILGDGDGIQIPVAQPVTDYNILIDALPSGTINDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWQDLEEEIERWMKAITLSLRILFPSERRLCERVFVGLSTTADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPEFDSVFSDQYCLLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLRAACKSRQTLEQVFDEPALPSERAAASSSLSVQMEWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSDLGSVLGDDWIRKHSVKNRQYLGNYLKSSWSKVVGALKMDSGTLAPTVMKEKLQSFNMQFEEICQTQSTWVIFENQLREETRISVAKILLPAYQKFIGRYQSLPELAKRTDRYLKYTAEEMEARINELFEGGNSGSGRR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 469752 472193 + MELO3C020519.2.1 Cme12g00048 343265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00048 672 PANTHER EXOCYST COMPLEX PROTEIN EXO70 74 663 IPR004140 GO:0000145|GO:0006887
Cme12g00048 672 SUPERFAMILY Cullin repeat-like 128 663 IPR016159 -
Cme12g00048 672 Pfam Exo70 exocyst complex subunit 313 660 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme12g00048 672 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 74 663 - -
Cme12g00048 672 Gene3D Exocyst complex component Exo70 127 672 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01028 Cme-Chr9:14417486 Cme12g00048 Cme-Chr12:469752 5.03E-130 dispersed
Cme12g00048 Cme-Chr12:469752 Cme12g01592 Cme-Chr12:23218332 4.93E-125 dispersed
Cme12g00048 Cme-Chr12:469752 Cme11g01259 Cme-Chr11:19404241 1.29E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00048 K07195 - csv:101204511 1201.04