Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00064 ATGGTCAAATCCACGGCGCTTTCTTGGACCCGAAGTAATTCTCCCATCGGGAAAGGCTCCTTTGGAACCGTCTCTCTCGGTATTGGAAAACCCCACGCTCGGATTTTTGCGGTCAAGTCTGTGGAGCAGAGTCATGGATTCCGCCCACAAATTGAGTGTTTAGAGAATGAAATTCGAATTCTCCGATCGTTGAACTCGCCTTACGTTGTTCGGTTTCTCGGCGATGATGTTTCCGATGAATCTCCCACGACTTCGTTTCGTAACCTGCATATGGAGTATTTGCCAGGTGGCACTGTAGCAGATGACCCCACTGGCACTGGCAATGAGAAGCTTTTACGGGAGAGGACATGGTGCCTCGTTTCGGCTTTGAGTTACATTCATTCCAAAGGAATTGTTCATTGTGATGTTAAAGGGAGGAACATTTTGGTCGGATTGAATCCCGGGTTTGTGAAATTGGCTGATTTCGGCTCTGCAATTGAACTTCACGGCGCCGGCGAAAGGTCTCGGGGTTCGGTTGCGCCACGTGGGAGTCCACTATGGATGGCGCCAGAGGTGGTCCGCGGAGAATTTCAGGGGCCGGAATCGGACGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGGAAACCGGCATGGGATGATTTCGGAGCCGATACGCTGAGTCGAATCGGCTTTTCCGACGATTTGCCAGAGTTTCCAACATGGTTATCGGAAGTCTGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGAAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCGGCGGAGGCCTCGCCGGAGATTGCTGTAGAGAATTCTCCCAGGTGCGTTCTTGACTGGGTCAACAGCAGTTTCTCCGACGACGAGGAGGAAATTCCAAACGCCGACGAACCCTCCGGATCCGGCGGCCAGGAAAATGAGATATATGGTAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGGCGGTGAGAAGTTGTTGCAGTGAAGCGGCGGGGGAGACGGAGGAGAGCTGCCGGAAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGCAGAATGGGAATGTGGGAATTGGAGAAGGGTAGAAGGGGAAATGGAAGGGACAAGTTCGGAATATTCGGAGTTTGTAAGAAGAGACAATCACGGAAAATTGGACGCCCAATATTCAAATCCTGGCGGTATCACAATTCCGGAGCGGCCACGTAATAATTACGGCCGCGGTGACGGTTGCGGTGACGGTGGCGGTAGCGGTGGATTAAGTTTCCGGCGGTTGGGGTATGAAAGATATGAAATTACAACAATAACTTCGTGGATATACTCAATTGAATTGATATTATGTTGTTATTTTTGGCATATATTAATGAAGCAATTGGTGTTATTCGGG 1464 50.55 MVKSTALSWTRSNSPIGKGSFGTVSLGIGKPHARIFAVKSVEQSHGFRPQIECLENEIRILRSLNSPYVVRFLGDDVSDESPTTSFRNLHMEYLPGGTVADDPTGTGNEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILVGLNPGFVKLADFGSAIELHGAGERSRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWDDFGADTLSRIGFSDDLPEFPTWLSEVCRDFLRKCLRRNPSERWSCDRLLQHPFLAAAAAEASPEIAVENSPRCVLDWVNSSFSDDEEEIPNADEPSGSGGQENEIYGKERIGKLSTSEWPNWESDGWSAVRSCCSEAAGETEESCRKDEEEEEEEEEEEEEGAEWECGNWRRVEGEMEGTSSEYSEFVRRDNHGKLDAQYSNPGGITIPERPRNNYGRGDGCGDGGGSGGLSFRRLGYERYEITTITSWIYSIELILCCYFWHILMKQLVLFG 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 620766 622311 - MELO3C020535.2.1 Cme12g00064 343281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00064 488 Gene3D Transferase(Phosphotransferase) domain 1 4 309 - -
Cme12g00064 488 CDD STKc_MAPKKK 8 269 - -
Cme12g00064 488 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00064 488 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 4 368 - -
Cme12g00064 488 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Cme12g00064 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Cme12g00064 488 MobiDBLite consensus disorder prediction 354 380 - -
Cme12g00064 488 SUPERFAMILY Protein kinase-like (PK-like) 14 304 IPR011009 -
Cme12g00064 488 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 368 - -
Cme12g00064 488 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00064 488 Pfam Protein kinase domain 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00064 488 MobiDBLite consensus disorder prediction 360 379 - -
Cme12g00064 488 MobiDBLite consensus disorder prediction 299 319 - -
Cme12g00064 488 Coils Coil 353 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00064 Cme-Chr12:620766 Cme05g01657 Cme-Chr5:25692530 2.11E-48 dispersed
Cme12g00064 Cme-Chr12:620766 Cme11g00827 Cme-Chr11:10812050 2.51E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65291 PF00069 Pkinase 9.90E-53 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00064 - - cmo:103497226 960.674