Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g00066 | ATGTCTGTCTCTGTTGCGGTTTCCAATTCCCCGGGATTTTCCCCTTCATCCTCCATGTTCTGCAACAAGACCTCGATCATTTCTCCGGCGCCGGAGGCGTTGACGCTCACTTTAGCTCATTTGAAGTCATCGCAGGCTTCTTCCTCTTGCTCTTCATCTCCTTCTTCTCCTTCTTCCCCTTTCCGCATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCGGCAGCGGCGGCAGCGGTGGCGCTCGCTTCAACTTCTTCTCCTTCGTCATCGTCGTCGAGCGCGATCTTGAAAAGGAAGAGACCCGCTAGGTTGGATATTCCGTTGACACCTTTGAGTTTTGGCGCTCCGGTGATGCCTTCGCCATCCTCGTTTAGGGAGGTGGTGGAAGCCGAGAGAGATGGGTATTCTGTGTATTGTAAGAGAGGTAGGAGGAGAATTGCTATGGAAGATCGGTATTCTGCTGCTGTTGATATTAATGGAAATTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGAGGTGTAAAGGCAGCTGAATTTGCAGCAAATAACTTAGAGAAGAATGTTTTGAATGAAATTGAGAGAATGGGTGATAATGAAACTGATTTTAAACAAGCTATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCTTGTTGTGTGACGGCCCTTATCAAGAAAGGCAACCTTGTTATTTCCAACGCCGGTGATTGTCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATCACTTCCGACCACCGCCCATCCCGGGAAGACGAAAGGCACAGGATCGAGTCCACGGTAAGAATTGAATTGGTAGATGATGATTCCATTAATTCATTAACAAATTAG | 888 | 48.09 | MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRIRFPKPPSGLSAAAAAVALASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAVDINGNSKEAFFGVFDGHGGVKAAEFAANNLEKNVLNEIERMGDNETDFKQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERHRIESTVRIELVDDDSINSLTN | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 638954 | 640868 | - | MELO3C020536.2.1 | Cme12g00066 | 343283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g00066 | 295 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 279 | IPR015655 | GO:0004722|GO:0006470 | |
| Cme12g00066 | 295 | Pfam | Protein phosphatase 2C | 140 | 278 | IPR001932 | - | |
| Cme12g00066 | 295 | CDD | PP2Cc | 134 | 277 | IPR001932 | - | |
| Cme12g00066 | 295 | SMART | PP2C_4 | 127 | 295 | IPR001932 | - | |
| Cme12g00066 | 295 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 3 | 279 | - | - | |
| Cme12g00066 | 295 | ProSitePatterns | PPM-type phosphatase domain signature. | 166 | 174 | IPR000222 | GO:0043169 | |
| Cme12g00066 | 295 | SUPERFAMILY | PP2C-like | 134 | 278 | IPR036457 | - | |
| Cme12g00066 | 295 | ProSiteProfiles | PPM-type phosphatase domain profile. | 134 | 295 | IPR001932 | - | |
| Cme12g00066 | 295 | Gene3D | - | 123 | 289 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme10g01458 | Cme-Chr10:17809458 | Cme12g00066 | Cme-Chr12:638954 | 1.09E-68 | dispersed | |
| Cme12g00066 | Cme-Chr12:638954 | Cme03g00021 | Cme-Chr3:488587 | 1.42E-35 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g00066 | K17506 | - | csv:101207841 | 438.343 |