Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00066 ATGTCTGTCTCTGTTGCGGTTTCCAATTCCCCGGGATTTTCCCCTTCATCCTCCATGTTCTGCAACAAGACCTCGATCATTTCTCCGGCGCCGGAGGCGTTGACGCTCACTTTAGCTCATTTGAAGTCATCGCAGGCTTCTTCCTCTTGCTCTTCATCTCCTTCTTCTCCTTCTTCCCCTTTCCGCATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCGGCAGCGGCGGCAGCGGTGGCGCTCGCTTCAACTTCTTCTCCTTCGTCATCGTCGTCGAGCGCGATCTTGAAAAGGAAGAGACCCGCTAGGTTGGATATTCCGTTGACACCTTTGAGTTTTGGCGCTCCGGTGATGCCTTCGCCATCCTCGTTTAGGGAGGTGGTGGAAGCCGAGAGAGATGGGTATTCTGTGTATTGTAAGAGAGGTAGGAGGAGAATTGCTATGGAAGATCGGTATTCTGCTGCTGTTGATATTAATGGAAATTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGAGGTGTAAAGGCAGCTGAATTTGCAGCAAATAACTTAGAGAAGAATGTTTTGAATGAAATTGAGAGAATGGGTGATAATGAAACTGATTTTAAACAAGCTATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCTTGTTGTGTGACGGCCCTTATCAAGAAAGGCAACCTTGTTATTTCCAACGCCGGTGATTGTCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATCACTTCCGACCACCGCCCATCCCGGGAAGACGAAAGGCACAGGATCGAGTCCACGGTAAGAATTGAATTGGTAGATGATGATTCCATTAATTCATTAACAAATTAG 888 48.09 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRIRFPKPPSGLSAAAAAVALASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAVDINGNSKEAFFGVFDGHGGVKAAEFAANNLEKNVLNEIERMGDNETDFKQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERHRIESTVRIELVDDDSINSLTN 295
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 638954 640868 - MELO3C020536.2.1 Cme12g00066 343283
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00066 295 PANTHER PROTEIN PHOSPHATASE 2C 3 279 IPR015655 GO:0004722|GO:0006470
Cme12g00066 295 Pfam Protein phosphatase 2C 140 278 IPR001932 -
Cme12g00066 295 CDD PP2Cc 134 277 IPR001932 -
Cme12g00066 295 SMART PP2C_4 127 295 IPR001932 -
Cme12g00066 295 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 279 - -
Cme12g00066 295 ProSitePatterns PPM-type phosphatase domain signature. 166 174 IPR000222 GO:0043169
Cme12g00066 295 SUPERFAMILY PP2C-like 134 278 IPR036457 -
Cme12g00066 295 ProSiteProfiles PPM-type phosphatase domain profile. 134 295 IPR001932 -
Cme12g00066 295 Gene3D - 123 289 IPR036457 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01458 Cme-Chr10:17809458 Cme12g00066 Cme-Chr12:638954 1.09E-68 dispersed
Cme12g00066 Cme-Chr12:638954 Cme03g00021 Cme-Chr3:488587 1.42E-35 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00066 K17506 - csv:101207841 438.343