Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00092 ATGGTGGGTTTGCATGAGCCGTTGGTACTGATTGGGGATTTGGAGATCAATGAAGGAGGCGAGACGGTGGAGGCTTCGGTTCCAGTGAGACTGGGGTTGGTTAGAGAATTGTGGAGGAATTTGGTGAAAGTGGTTTTTGGAACAAAGCTTGCTGTGCTTTTTTCGGCCATCCCTTTGGCTATGGCGGCGGATTTTTATAGCTTTGGAAGAACATGGATATTTGGTCTGAGCTTACTTGGACTGGCCCCACTTGCCGAACGTGTCAGTTTTCTGACAGAGCAGATTGCATGCTACACAGGGCCTACAGTGGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATGTTTGCTCTTCATCAAAACAAAGTCAATGTCTTGAAGTTCTCTCTTTTGGGTTCTATTCTTTCCAATTTGCTTCTTGTTCTTGGAACTTCCTTTCTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAGACTTTCAACTTAAAAGTGGCGAATGTGAGCTGTGTGTTGTTGTTGTTGGGATTGCTATGCCAAATGTTACCATTGATGCTTACATTTGCATCACCCAAAATCTCAACAAACATTTATGTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCATTGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGATGAGGATGAGGATGAAGAAGAAGTAGAAAGGGCAGTAATTGGTATTTGGAGTTCAATTGCTTGGTTGGTTGGTATGACCATACTCATATCTATTTTATCACAATACATTGTTGCAACAATTGAGGATGCATCAAAATCATGGGGAGTATCAATGAGCTTTGTAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATTACACTTGGAATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTGTTGGATGGTGTATGGGCATCAAAATGGATCTTGATTTTGGTATCATTGAAACTACTTCTCTTGCCTTCGCCATCATCTTGACTATCTTCACTTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTACTTGTCCTAAGTTATGTTGCAATTTCTTCCTGTTTTTTCTATTCATAA 1212 40.76 MVGLHEPLVLIGDLEINEGGETVEASVPVRLGLVRELWRNLVKVVFGTKLAVLFSAIPLAMAADFYSFGRTWIFGLSLLGLAPLAERVSFLTEQIACYTGPTVGGLVNATCGNATELIIAMFALHQNKVNVLKFSLLGSILSNLLLVLGTSFLFGGLSNLNKQQTFNLKVANVSCVLLLLGLLCQMLPLMLTFASPKISTNIYVLQLSRTCSLLMLIAYIAYVFFQLKTHHQFFGLPQEDEDEDEEEVERAVIGIWSSIAWLVGMTILISILSQYIVATIEDASKSWGVSMSFVSIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIVGWCMGIKMDLDFGIIETTSLAFAIILTIFTLQDGSSHYIKGMVLVLSYVAISSCFFYS 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 924964 929071 + MELO3C020552.2.1 Cme12g00092 343309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00092 403 Pfam Sodium/calcium exchanger protein 258 395 IPR004837 GO:0016021|GO:0055085
Cme12g00092 403 Pfam Sodium/calcium exchanger protein 71 227 IPR004837 GO:0016021|GO:0055085
Cme12g00092 403 TIGRFAM caca2: calcium/proton exchanger 36 401 - -
Cme12g00092 403 PANTHER VACUOLAR CATION/PROTON EXCHANGER 28 402 - -
Cme12g00092 403 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 28 402 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cme12g00092 403 Gene3D - 101 251 IPR044880 -
Cme12g00092 403 Gene3D - 252 400 IPR044880 -
Cme12g00092 403 TIGRFAM cax: calcium/proton exchanger 54 401 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02585 Cme-Chr8:33283309 Cme12g00092 Cme-Chr12:924964 4.88E-155 dispersed
Cme12g00092 Cme-Chr12:924964 Cme11g00829 Cme-Chr11:10843939 2.79E-06 dispersed
Cme04g01311 Cme-Chr4:18463183 Cme12g00092 Cme-Chr12:924964 8.25E-104 transposed
Cme11g01002 Cme-Chr11:14304866 Cme12g00092 Cme-Chr12:924964 1.42E-102 transposed
Cme12g00092 Cme-Chr12:924964 Cme04g02718 Cme-Chr4:32580817 1.14E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00092 K07300 - csv:105436053 665.225