Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00092 | ATGGTGGGTTTGCATGAGCCGTTGGTACTGATTGGGGATTTGGAGATCAATGAAGGAGGCGAGACGGTGGAGGCTTCGGTTCCAGTGAGACTGGGGTTGGTTAGAGAATTGTGGAGGAATTTGGTGAAAGTGGTTTTTGGAACAAAGCTTGCTGTGCTTTTTTCGGCCATCCCTTTGGCTATGGCGGCGGATTTTTATAGCTTTGGAAGAACATGGATATTTGGTCTGAGCTTACTTGGACTGGCCCCACTTGCCGAACGTGTCAGTTTTCTGACAGAGCAGATTGCATGCTACACAGGGCCTACAGTGGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATGTTTGCTCTTCATCAAAACAAAGTCAATGTCTTGAAGTTCTCTCTTTTGGGTTCTATTCTTTCCAATTTGCTTCTTGTTCTTGGAACTTCCTTTCTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAGACTTTCAACTTAAAAGTGGCGAATGTGAGCTGTGTGTTGTTGTTGTTGGGATTGCTATGCCAAATGTTACCATTGATGCTTACATTTGCATCACCCAAAATCTCAACAAACATTTATGTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCATTGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGATGAGGATGAGGATGAAGAAGAAGTAGAAAGGGCAGTAATTGGTATTTGGAGTTCAATTGCTTGGTTGGTTGGTATGACCATACTCATATCTATTTTATCACAATACATTGTTGCAACAATTGAGGATGCATCAAAATCATGGGGAGTATCAATGAGCTTTGTAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATTACACTTGGAATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTGTTGGATGGTGTATGGGCATCAAAATGGATCTTGATTTTGGTATCATTGAAACTACTTCTCTTGCCTTCGCCATCATCTTGACTATCTTCACTTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTACTTGTCCTAAGTTATGTTGCAATTTCTTCCTGTTTTTTCTATTCATAA | 1212 | 40.76 | MVGLHEPLVLIGDLEINEGGETVEASVPVRLGLVRELWRNLVKVVFGTKLAVLFSAIPLAMAADFYSFGRTWIFGLSLLGLAPLAERVSFLTEQIACYTGPTVGGLVNATCGNATELIIAMFALHQNKVNVLKFSLLGSILSNLLLVLGTSFLFGGLSNLNKQQTFNLKVANVSCVLLLLGLLCQMLPLMLTFASPKISTNIYVLQLSRTCSLLMLIAYIAYVFFQLKTHHQFFGLPQEDEDEDEEEVERAVIGIWSSIAWLVGMTILISILSQYIVATIEDASKSWGVSMSFVSIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIVGWCMGIKMDLDFGIIETTSLAFAIILTIFTLQDGSSHYIKGMVLVLSYVAISSCFFYS | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 924964 | 929071 | + | MELO3C020552.2.1 | Cme12g00092 | 343309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00092 | 403 | Pfam | Sodium/calcium exchanger protein | 258 | 395 | IPR004837 | GO:0016021|GO:0055085 | |
Cme12g00092 | 403 | Pfam | Sodium/calcium exchanger protein | 71 | 227 | IPR004837 | GO:0016021|GO:0055085 | |
Cme12g00092 | 403 | TIGRFAM | caca2: calcium/proton exchanger | 36 | 401 | - | - | |
Cme12g00092 | 403 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER | 28 | 402 | - | - | |
Cme12g00092 | 403 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 28 | 402 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
Cme12g00092 | 403 | Gene3D | - | 101 | 251 | IPR044880 | - | |
Cme12g00092 | 403 | Gene3D | - | 252 | 400 | IPR044880 | - | |
Cme12g00092 | 403 | TIGRFAM | cax: calcium/proton exchanger | 54 | 401 | IPR004798 | GO:0006816|GO:0015369 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g02585 | Cme-Chr8:33283309 | Cme12g00092 | Cme-Chr12:924964 | 4.88E-155 | dispersed | |
Cme12g00092 | Cme-Chr12:924964 | Cme11g00829 | Cme-Chr11:10843939 | 2.79E-06 | dispersed | |
Cme04g01311 | Cme-Chr4:18463183 | Cme12g00092 | Cme-Chr12:924964 | 8.25E-104 | transposed | |
Cme11g01002 | Cme-Chr11:14304866 | Cme12g00092 | Cme-Chr12:924964 | 1.42E-102 | transposed | |
Cme12g00092 | Cme-Chr12:924964 | Cme04g02718 | Cme-Chr4:32580817 | 1.14E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00092 | K07300 | - | csv:105436053 | 665.225 |