Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00101 ATGGCCAACGACGACGCCGTTTTCCCCTTCCTCTCCTTTTTCCTCTTTCTCATTCTCACTTACTTCATTTGGTTCCATTTCCTCGCCCGTAAACTCACCGGTCCACCGGTATGGCCGCTCATCGGCAGCCTCCCGGCTCTCATCTCCAACCGCCGACGCCTCCACGACTGGATCGCCGGAAACCTCCGAGCCACAGGCGGCGCTGCCACTTACCAAACATGCACGGTAGCACTTCCCTTCATAGCTAAAAGACAAGGATTTTACACTGTCACGTGCCATCCTAGAAACATCGAGCACGTGCTTCGAACCCGGTTCGAAAACTACCCGAAAGGACCGGATTGGCAAGCGGCTTTTCACGATTTGTTAGGCCAAGGGATTTTCAATAGCGACGGAGAAATTTGGCTGATTCAACGGAAGACGGCGGCGCTTGAGTTCACCACGAGGACCCTCCGCCAAGCGATGGACCGTTGGGTGAATCGGACGATAAGGACGAGGTTGTGGTGTATATTGGAGAAGGCGGCGGAGTATAAGACGGCGGTGGATTTACAGGATTTGTTGCTCCGATTAACATTCGATAATATTTGTGGACTGACTTTTGGGAAAGATCCACAAACTTTGTCGCCGGAGTTGCCGGCAAATCCGTTTGCTTTGGCGTTTGATACCGCCACTGAAGCCACCCTTCAGCGCCTTCTTTACCCTGGCCTTTTATGGAGGTTGGAGAAGGTTTTGGGCATTGGAATGGAAAGAAGGTTAAAGAAGAGTTTGAAAGTAGTTGAAGAATACATAAACGACGCTGTTGCAGCCCGTAATAAAGAATCTCCCTCCGACGACTTATTATCCCGTTTCATGAAGAAACGAGACAGCGACCGCTTCTCCACCGCCGTCCTCCACCGTATTGCCTTAAACTTCGTCCTCGCCGGTCGTGACACCTCCTCCGTGGCTCTCACGTGGTTCTTTTGGCTCGTAATGAACCACCCGGACGTGGAGGAAAAAATCCTCTCTGAAATCTCAACCGTCCTTCGCCAGACACGTGGCGACGACCCACGCCGTTGGATCGAAGAGCCGTTGGTGTTCGACGAAGCCGATAAATTGGTGTACTTAAAAGCCGCATTGGCCGAAACACTGCGTTTATACCCTTCCGTACCGGAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCAGCTGGTTCGACGGTGACGTATTCGATTTACTCTGTTGGGAGGATGAAGAGCATTTGGGGGGAGGATTGTACGGAGTTTAAACCGGAACGGTGGTTGTCTCCGGCCGGTGACCGGTTCGAGGGGCCAAAAGATGCTTATAAGTTTGTGGCGTTCAATGCTGGACCGAGGACTTGTTTGGGGAAAGATTTGGCTTATTTGCAAATGAAGTCTGTTGCCTCGGCCGTACTCCTCCGGTATCGGCTAACGCCGGTTCCCGGTCACCGGGTGGAACAGAAAATGTCTCTTACTCTTTTTATGAAGAATGGGCTTCGGGTTTATTTACATCCTCGCCAGCTCGGCTAG 1545 51.84 MANDDAVFPFLSFFLFLILTYFIWFHFLARKLTGPPVWPLIGSLPALISNRRRLHDWIAGNLRATGGAATYQTCTVALPFIAKRQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKVLGIGMERRLKKSLKVVEEYINDAVAARNKESPSDDLLSRFMKKRDSDRFSTAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPDVEEKILSEISTVLRQTRGDDPRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPEDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCTEFKPERWLSPAGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLTPVPGHRVEQKMSLTLFMKNGLRVYLHPRQLG 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 998669 1001400 - MELO3C020561.2.1 Cme12g00101 343318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00101 514 SUPERFAMILY Cytochrome P450 23 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 Gene3D Cytochrome P450 28 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PANTHER CYTOCHROME P450 15 512 - -
Cme12g00101 514 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 15 512 - -
Cme12g00101 514 Pfam Cytochrome P450 89 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Cme12g00101 514 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00101 514 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02166 Cme-Chr11:29045454 Cme12g00101 Cme-Chr12:998669 0 dispersed
Cme12g00613 Cme-Chr12:10954273 Cme12g00101 Cme-Chr12:998669 2.32E-100 dispersed
Cme12g00101 Cme-Chr12:998669 Cme09g01772 Cme-Chr9:22177392 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00101 K15401 - csv:101214516 1001.12