Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00139 ATGGCGGAGATTTGTTGTAAAGTTATGAGTGAGAGTGAGGCGTCGTCTTCTTGCGAGCCCAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGATGTAAATTTGTTGCCAGGGTTGATCCGACGGAGACGGAGACTGTTGCGAAACGACAGAAGCTGGAGGATCGAGCTACGTCGATTTCCAGAGATTGTGATAACGCAGTTCAGAATTGTGATTCGGGTGAAGAAGAAACCGTTGGGAGATTTGTGGCTGGAGAGGTTTCGACGAAGGAGGTCTCGGCTCCTCTGTCTAGGGAATCTCCTTGTGAGGTGGTGGTTCCGAAATTTGGACTCTCTTCTGTTTGTGGAAGGCGGAGAGAGATGGAGGATGCGGTGGCAGTTCATCCATCGCTCTGTTTTACGGAGAAGAAAGCCAATGATATGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGTTCTCATGTGGCGATGAGGTGTAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTAGATAGGGAGGAGATGGAAGACGCCGCCGGTGCGGCGGAGACAGAGGCGGAGACGGCGTCTCGGTGGGACCGTACTATGAAGAGAGTCTTCCGGAGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTAGCGAACTGTAGATGCGAACTCCAGTCGCCGGATTGCGATGCCGTTGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGTAACGGGAAGGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGTCCCGATGAACTTAGCCGGATCGAGGAAGCCGGCGGACGAGTGATATACTGGGACGGACCGAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGTGATAATTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACGAATCGGACGGCGGAGGATGAGTGCTTGATATTAGGGAGCGATGGACTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCTTGAGAGGGAAGGCGGATGAGAGGTCGGCGTTGTCGCCGTCGAGGGAGGCGGAGACGGCGGTGGAAGGGGAAGAGAGAGGAAACGCCGACAAAGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACTCACCCTTAA 1284 55.14 MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVARVDPTETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSAPLSRESPCEVVVPKFGLSSVCGRRREMEDAVAVHPSLCFTEKKANDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEMEDAAGAAETEAETASRWDRTMKRVFRRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILGSDGLWDVVPNETACGVASMCLRGKADERSALSPSREAETAVEGEERGNADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTHP 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1356184 1358335 + MELO3C020601.2.1 Cme12g00139 343356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00139 427 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169
Cme12g00139 427 PANTHER PROTEIN PHOSPHATASE 2C 37 44 424 - -
Cme12g00139 427 Pfam Protein phosphatase 2C 111 373 IPR001932 -
Cme12g00139 427 Gene3D - 100 426 IPR036457 -
Cme12g00139 427 MobiDBLite consensus disorder prediction 368 389 - -
Cme12g00139 427 PANTHER ALPHABET, ISOFORM E-RELATED 44 424 - -
Cme12g00139 427 SMART PP2C_4 100 419 IPR001932 -
Cme12g00139 427 MobiDBLite consensus disorder prediction 369 389 - -
Cme12g00139 427 Coils Coil 52 72 - -
Cme12g00139 427 ProSiteProfiles PPM-type phosphatase domain profile. 110 421 IPR001932 -
Cme12g00139 427 CDD PP2Cc 110 421 IPR001932 -
Cme12g00139 427 SUPERFAMILY PP2C-like 105 422 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00139 Cme-Chr12:1356184 Cme03g00427 Cme-Chr3:5966702 1.05E-44 dispersed
Cme02g00179 Cme-Chr2:1396259 Cme12g00139 Cme-Chr12:1356184 1.15E-77 transposed
Cme03g01406 Cme-Chr3:23508330 Cme12g00139 Cme-Chr12:1356184 3.19E-75 transposed
Cme04g01231 Cme-Chr4:17057698 Cme12g00139 Cme-Chr12:1356184 5.06E-79 transposed
Cme05g00390 Cme-Chr5:3154244 Cme12g00139 Cme-Chr12:1356184 2.71E-57 transposed
Cme06g00939 Cme-Chr6:6588261 Cme12g00139 Cme-Chr12:1356184 2.34E-82 transposed
Cme06g01115 Cme-Chr6:8480427 Cme12g00139 Cme-Chr12:1356184 1.55E-80 transposed
Cme12g00139 Cme-Chr12:1356184 Cme03g00181 Cme-Chr3:2201117 4.34E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00139 K14497 - csv:101206871 753.821