Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00163 ATGGATAATCTCCTCGACGATTTTCCCAATTCTTGGAATAATACTTATCCCTTCCATCCCCATCTTTCTACTTCTCTGTTCAAAGTCACTCGTGATGTCGTTGATCCCCTTCAGATTCCGGCCAAATCACATCAACATCAACATCAACACCGCCAACTTACTAACAATTCCTCCTCCTCCCCCTCCTCCTCCAGCTCCGAAGGAGATTCTCCCGATAGTCATGACACCTCTAACACCATGCTCAAATACATCACCGAGATGTTGATGGATGAAGGTGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTCAGAAGTATCCCCCTTCTCCAATCGGTGATTCTTCTTGCTGTGATAGAGGTTTAGGAGGCGAAGATGAATCTGAGTCTTTTAATGGTAACTCTGACTCCTCTTTTTTTCACCCTTTTCAAAACTCTGTTTTAAGTCAAGATTCGTTTCTTGGGATGCAATTTCTTGGCCATTTTAGACAAGGAGCTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGACTTGGATAATGATTCTTCTAGTTCTACCTCTTTTCCTTCTAGGCCAGTTGATTTTTCTTGGGTTGCTGCCGAGAACGATGGTAGATCCAGCCTTGAAAATGGGTTGTTAAGAGAAAAGAAAAACCGTTTGAGGGAAGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAATTTTGCTGATGATAATTCACTGTCTGACTTGTTTGATGAGGTTCTTCTTTGTCGTGGCGAGAGTCGGCAGTCTCCCCCGTCGTGTGGTTCCGATGAATCATCGGAGAGCGAAGCGAATAAGAAATCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAAAGTAGTCGTTCTAGGAAGCAAGAGAACAGTGTGGAAGTTGTGGATTTGTGGACATTGTTAACTCAATGTGCTCAAGCTGTTTCAAATTACGATCAAAGAACTGCCAATGAACTGCTTAATCAAATCAGGCAGCACTCTAATCCATCTGGGGATGGAAATCAAAGATTAGCTCATTACTTTGCTAAGGGTCTTGAGACTCGTCTTGCCGCCGGTACGCCTCTATATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGGATGTCATATTTCTATGGCAATAGAACAATTCTGAAGTTAGCCGAGAAAGTCTCAACATTGCATATTGTTGATTTTGGGATTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAACGGCTTTCGCGTAGACCTGGTGGACCTCCGAAACTTCGGATAACAGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCTGCTGAACGTGTTGAGCAGACTGGTCGTCGTCTTGCACATTACTGCAAAAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAAAAATGGGAAACGGTTCGATACGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAAAACGTACCCGACGAAACAGTAGTCGCTAACAGCCCGAGAGATAGGGTTCTAAAGTTGATCAGGAAAATCAATCCAGATCTCTTCATTCATGAAGTCACCAATGGTTCATTTAACACTCCATTTTTCAACACAAGGTTTAAAGAGGCACTCTTTTACTACTCGTCGTTGTTCGACATGTACGAAGCGACAGTGCCTCGAGACAATCCCCAGAGGTTTCTGTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTTGAGAGAGTCGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACAAGGGCCGGGTTCAAGCAAGTACCATTAGACCAAGATTTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCAATATCGATCAAGACGGGTCGTGGATGTTGCAAGGGTGGAAAGGACGGATTATCGACGCGTTATCATGTTGGGTTGTTGCCTAA 2097 44.06 MDNLLDDFPNSWNNTYPFHPHLSTSLFKVTRDVVDPLQIPAKSHQHQHQHRQLTNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEGEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPIGDSSCCDRGLGGEDESESFNGNSDSSFFHPFQNSVLSQDSFLGMQFLGHFRQGAEEASKFLPVNGRFGTIDLDNDSSSSTSFPSRPVDFSWVAAENDGRSSLENGLLREKKNRLREDSDEELRSSKQSANFADDNSLSDLFDEVLLCRGESRQSPPSCGSDESSESEANKKSRGRGKRKGKKSSRSRKQENSVEVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYGNRTILKLAEKVSTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFNIDQDGSWMLQGWKGRIIDALSCWVVA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1573520 1576125 - MELO3C020619.2.1 Cme12g00163 343380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00163 698 ProSiteProfiles GRAS family profile. 317 696 IPR005202 -
Cme12g00163 698 MobiDBLite consensus disorder prediction 279 317 - -
Cme12g00163 698 MobiDBLite consensus disorder prediction 40 77 - -
Cme12g00163 698 MobiDBLite consensus disorder prediction 238 257 - -
Cme12g00163 698 MobiDBLite consensus disorder prediction 50 77 - -
Cme12g00163 698 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 696 IPR005202 -
Cme12g00163 698 MobiDBLite consensus disorder prediction 238 255 - -
Cme12g00163 698 Pfam GRAS domain family 328 695 IPR005202 -
Cme12g00163 698 PANTHER SCARECROW-LIKE PROTEIN 30 36 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00929 Cme-Chr11:12896452 Cme12g00163 Cme-Chr12:1573520 2.34E-69 dispersed
Cme12g00163 Cme-Chr12:1573520 Cme03g00100 Cme-Chr3:1431480 3.02E-63 dispersed
Cme01g00709 Cme-Chr1:6656238 Cme12g00163 Cme-Chr12:1573520 6.99E-67 transposed
Cme09g01928 Cme-Chr9:23359771 Cme12g00163 Cme-Chr12:1573520 5.82E-46 transposed
Cme11g01318 Cme-Chr11:20006693 Cme12g00163 Cme-Chr12:1573520 0 wgd
Cme12g00163 Cme-Chr12:1573520 Cme04g02627 Cme-Chr4:32120122 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42285 PF03514 GRAS 3.40E-114 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00163 - - csv:101217374 1331.24