Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00171 ATGGAAATGGGTAATTCTAGACTTCAATTTTTTTACTTTTGGGTTTTTTTTCTGTGTTCAGGTGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGGGCTTGTTTCGAAATTAAATGTGCGAATGACCCAAGATGGTGCCATTCCGGCAGCCCGTCGATTGTTATTACGGCTACTAATTTCTGCCCTCCGAACTTTGCTTTGCCCAGTGATAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTCAAGATTGCTGAGTATCGCGCCGGAATCGTTCCCGTCGCCTACCGCCGAGTGGCATGTCGTAAACCGGGAGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTCTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGAACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCCAACGCCGTCTTAGTCGGCCAGGCCTTGTCTTTTAGAGTCACCGGCAGCGACAGACGGACTTCCACCTCCATCAACGTCGCTCCCCTCCGATTGGCAGTTCGGCCAAACCTTCACCGGCAGGAATTTTAG 684 52.19 MEMGNSRLQFFYFWVFFLCSGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKPGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSINVAPLRLAVRPNLHRQEF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1665953 1667738 + MELO3C020626.2.1 Cme12g00171 343388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00171 227 PANTHER EXPANSIN 20 214 - -
Cme12g00171 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 213 IPR007117 -
Cme12g00171 227 SUPERFAMILY Barwin-like endoglucanases 14 153 IPR036908 -
Cme12g00171 227 Pfam Lytic transglycolase 38 125 IPR009009 -
Cme12g00171 227 Gene3D - 9 131 IPR036908 -
Cme12g00171 227 PANTHER EXPANSIN-A15 20 214 IPR002963 GO:0009664
Cme12g00171 227 Gene3D - 135 218 IPR036749 -
Cme12g00171 227 SMART dpbb_1 38 125 IPR007112 -
Cme12g00171 227 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 110 123 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 74 84 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 134 146 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 146 167 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 60 71 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 33 47 IPR002963 GO:0009664
Cme12g00171 227 PRINTS Expansin signature 93 110 IPR002963 GO:0009664
Cme12g00171 227 SUPERFAMILY PHL pollen allergen 132 213 IPR036749 -
Cme12g00171 227 Pfam Expansin C-terminal domain 136 213 IPR007117 -
Cme12g00171 227 PRINTS Expansin/Lol pI family signature 20 38 IPR007118 GO:0005576
Cme12g00171 227 PRINTS Expansin/Lol pI family signature 118 134 IPR007118 GO:0005576
Cme12g00171 227 PRINTS Expansin/Lol pI family signature 172 186 IPR007118 GO:0005576
Cme12g00171 227 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Cme12g00171 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 21 135 IPR007112 -
Cme12g00171 227 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01314 Cme12g00171 CCT
Cme11g01314 Cme12g00171 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00171 Cme-Chr12:1665953 Cme10g00403 Cme-Chr10:2578552 1.06E-104 dispersed
Cme10g00899 Cme-Chr10:6397055 Cme12g00171 Cme-Chr12:1665953 4.93E-131 wgd
Cme11g01314 Cme-Chr11:19942997 Cme12g00171 Cme-Chr12:1665953 1.04E-131 wgd
Cme12g00171 Cme-Chr12:1665953 Cme08g02411 Cme-Chr8:30997262 1.83E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00171 - - csv:101206662 406.757