Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00199 ATGAGCAATGATTCTTCTATAGATCAAGACCGCCTGAGGAGACTGTCTGAAAAATTACAGTTAATAGGAATATCCGATCTTACACAAGAATCAATAGCTTTGCATGAGATGGTTGCTGCTACTGATGGTGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTTGTGCAAACGGAGAACCTTGAAACGGAAGCTCCTAGTAGAGACAAGAGTCCTCCAGCAAGTTGTAGTGGTCATGTATCCAATGATAAAAATAACAAGACCCCAATTATACCAGATGATTTTCGCTGCCCAATTTCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGTGACATGTCCAAAGACACAACAGAACCTCTCAAGCACTACTCTTACTCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGTGAAGCCAACGGTATTGAACCACCAAAACGACCCAGCAGTGCTCGAACATGTAGAAGCTCATCATCTTGCTCAGCTGCTGAACGCACAAAAATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCGGAAGATCAACGATCTGCAGCCGGAGAGATTCGACTTCTTGCAAAACGGAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATCCCTCTCCTTGTTGGCCTTCTCTCAACTCCGGACTCCCGTGTTCAAGAGCATGCTGTGACGGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTAAAAAAGGGAAGCATGGAAGCACGGGAAAATGCAGCAGCCACTCTTTTCAGCCTTTCGGTTGTCGATGAAAACAAAGTTAGAATTGGCGCCTCCGGAGCCATCCCACCACTCGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGAAAGGCAGTAAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTAGATGAAGCCTTAGCTATCTTAGCTATACTCGCTAGTCACCCCGAAGGGAAAGCTGCCATCCGATCTGCAAAGGCAGTGCCGGTTTTGGTAGATGTGATTGGGACAGGATCCCCCAGGAACAGAGAAAATGCGGCTGCAGTTCTTGTACACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGAGAACTTGGAGTGATTAGTTCATTGATAGATTTGGCACGCAATGGCACTGATAGAGGAAAACGAAAAGCTGCACAATTGCTTGAACGAATAAACCGACTGTTTGAGCATGCAGCAGCACATCCGGAAGAGGTTAGGGTGCTTCGGTTGCAAACGTCGGAATCTCAACCTCAAAGCCAGCCATCGCAATCAACCTCAACAACGGAAGTCGTTGGTAGCTGA 1536 46.68 MSNDSSIDQDRLRRLSEKLQLIGISDLTQESIALHEMVAATDGDPGQSIEKMAGLLKKIKDFVQTENLETEAPSRDKSPPASCSGHVSNDKNNKTPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHVTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARTCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIRSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISSLIDLARNGTDRGKRKAAQLLERINRLFEHAAAHPEEVRVLRLQTSESQPQSQPSQSTSTTEVVGS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2053105 2055555 + MELO3C027221.2.1 Cme12g00199 343416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00199 511 ProSiteProfiles U-box domain profile. 97 171 IPR003613 GO:0004842|GO:0016567
Cme12g00199 511 MobiDBLite consensus disorder prediction 68 94 - -
Cme12g00199 511 Gene3D - 174 332 IPR011989 -
Cme12g00199 511 MobiDBLite consensus disorder prediction 487 511 - -
Cme12g00199 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Cme12g00199 511 SUPERFAMILY RING/U-box 93 174 - -
Cme12g00199 511 PANTHER U BOX DOMAIN-CONTAINING 1 477 - -
Cme12g00199 511 SUPERFAMILY ARM repeat 196 469 IPR016024 -
Cme12g00199 511 SMART arm_5 389 429 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 348 388 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 431 471 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 266 306 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 225 265 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 307 347 IPR000225 GO:0005515
Cme12g00199 511 SMART Ubox_2 101 164 IPR003613 GO:0004842|GO:0016567
Cme12g00199 511 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Cme12g00199 511 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Cme12g00199 511 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Cme12g00199 511 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 12 1 477 - -
Cme12g00199 511 CDD RING-Ubox_PUB 102 144 IPR045210 -
Cme12g00199 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Cme12g00199 511 Pfam U-box domain 98 168 IPR003613 GO:0004842|GO:0016567
Cme12g00199 511 Gene3D - 335 484 IPR011989 -
Cme12g00199 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 171 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00199 - - - cmo:103504179 944.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme11g01284 Cme12g00199 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01335 Cme-Chr3:22896656 Cme12g00199 Cme-Chr12:2053105 2.97E-20 dispersed
Cme03g01477 Cme-Chr3:24005512 Cme12g00199 Cme-Chr12:2053105 8.51E-34 dispersed
Cme04g00391 Cme-Chr4:3127949 Cme12g00199 Cme-Chr12:2053105 5.09E-11 dispersed
Cme05g01074 Cme-Chr5:16603013 Cme12g00199 Cme-Chr12:2053105 1.52E-70 dispersed
Cme08g00355 Cme-Chr8:2245658 Cme12g00199 Cme-Chr12:2053105 1.45E-62 dispersed
Cme08g00615 Cme-Chr8:3962765 Cme12g00199 Cme-Chr12:2053105 2.73E-70 dispersed
Cme08g00795 Cme-Chr8:5287691 Cme12g00199 Cme-Chr12:2053105 9.41E-09 dispersed
Cme10g00093 Cme-Chr10:668933 Cme12g00199 Cme-Chr12:2053105 0 dispersed
Cme10g01508 Cme-Chr10:18915283 Cme12g00199 Cme-Chr12:2053105 5.86E-153 dispersed
Cme12g00199 Cme-Chr12:2053105 Cme12g01264 Cme-Chr12:20726204 4.12E-84 dispersed
Cme12g01719 Cme-Chr12:23969629 Cme12g00199 Cme-Chr12:2053105 1.79E-21 dispersed
Cme12g00199 Cme-Chr12:2053105 Cme11g01284 Cme-Chr11:19590109 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00199 Cme_Chr12 FPKM 6.328753 8.487739 7.68399 8.193274 14.242579 14.450235 14.004566 12.753524 11.737423 13.233409