Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00199 ATGAGCAATGATTCTTCTATAGATCAAGACCGCCTGAGGAGACTGTCTGAAAAATTACAGTTAATAGGAATATCCGATCTTACACAAGAATCAATAGCTTTGCATGAGATGGTTGCTGCTACTGATGGTGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTTGTGCAAACGGAGAACCTTGAAACGGAAGCTCCTAGTAGAGACAAGAGTCCTCCAGCAAGTTGTAGTGGTCATGTATCCAATGATAAAAATAACAAGACCCCAATTATACCAGATGATTTTCGCTGCCCAATTTCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGTGACATGTCCAAAGACACAACAGAACCTCTCAAGCACTACTCTTACTCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGTGAAGCCAACGGTATTGAACCACCAAAACGACCCAGCAGTGCTCGAACATGTAGAAGCTCATCATCTTGCTCAGCTGCTGAACGCACAAAAATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCGGAAGATCAACGATCTGCAGCCGGAGAGATTCGACTTCTTGCAAAACGGAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATCCCTCTCCTTGTTGGCCTTCTCTCAACTCCGGACTCCCGTGTTCAAGAGCATGCTGTGACGGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTAAAAAAGGGAAGCATGGAAGCACGGGAAAATGCAGCAGCCACTCTTTTCAGCCTTTCGGTTGTCGATGAAAACAAAGTTAGAATTGGCGCCTCCGGAGCCATCCCACCACTCGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGAAAGGCAGTAAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTAGATGAAGCCTTAGCTATCTTAGCTATACTCGCTAGTCACCCCGAAGGGAAAGCTGCCATCCGATCTGCAAAGGCAGTGCCGGTTTTGGTAGATGTGATTGGGACAGGATCCCCCAGGAACAGAGAAAATGCGGCTGCAGTTCTTGTACACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGAGAACTTGGAGTGATTAGTTCATTGATAGATTTGGCACGCAATGGCACTGATAGAGGAAAACGAAAAGCTGCACAATTGCTTGAACGAATAAACCGACTGTTTGAGCATGCAGCAGCACATCCGGAAGAGGTTAGGGTGCTTCGGTTGCAAACGTCGGAATCTCAACCTCAAAGCCAGCCATCGCAATCAACCTCAACAACGGAAGTCGTTGGTAGCTGA 1536 46.68 MSNDSSIDQDRLRRLSEKLQLIGISDLTQESIALHEMVAATDGDPGQSIEKMAGLLKKIKDFVQTENLETEAPSRDKSPPASCSGHVSNDKNNKTPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHVTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARTCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIRSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISSLIDLARNGTDRGKRKAAQLLERINRLFEHAAAHPEEVRVLRLQTSESQPQSQPSQSTSTTEVVGS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2053105 2055555 + MELO3C027221.2.1 Cme12g00199 343416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00199 511 ProSiteProfiles U-box domain profile. 97 171 IPR003613 GO:0004842|GO:0016567
Cme12g00199 511 MobiDBLite consensus disorder prediction 68 94 - -
Cme12g00199 511 Gene3D - 174 332 IPR011989 -
Cme12g00199 511 MobiDBLite consensus disorder prediction 487 511 - -
Cme12g00199 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Cme12g00199 511 SUPERFAMILY RING/U-box 93 174 - -
Cme12g00199 511 PANTHER U BOX DOMAIN-CONTAINING 1 477 - -
Cme12g00199 511 SUPERFAMILY ARM repeat 196 469 IPR016024 -
Cme12g00199 511 SMART arm_5 389 429 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 348 388 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 431 471 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 266 306 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 225 265 IPR000225 GO:0005515
Cme12g00199 511 SMART arm_5 307 347 IPR000225 GO:0005515
Cme12g00199 511 SMART Ubox_2 101 164 IPR003613 GO:0004842|GO:0016567
Cme12g00199 511 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Cme12g00199 511 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Cme12g00199 511 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Cme12g00199 511 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 12 1 477 - -
Cme12g00199 511 CDD RING-Ubox_PUB 102 144 IPR045210 -
Cme12g00199 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Cme12g00199 511 Pfam U-box domain 98 168 IPR003613 GO:0004842|GO:0016567
Cme12g00199 511 Gene3D - 335 484 IPR011989 -
Cme12g00199 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 171 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01284 Cme12g00199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01335 Cme-Chr3:22896656 Cme12g00199 Cme-Chr12:2053105 2.97E-20 dispersed
Cme03g01477 Cme-Chr3:24005512 Cme12g00199 Cme-Chr12:2053105 8.51E-34 dispersed
Cme04g00391 Cme-Chr4:3127949 Cme12g00199 Cme-Chr12:2053105 5.09E-11 dispersed
Cme05g01074 Cme-Chr5:16603013 Cme12g00199 Cme-Chr12:2053105 1.52E-70 dispersed
Cme08g00355 Cme-Chr8:2245658 Cme12g00199 Cme-Chr12:2053105 1.45E-62 dispersed
Cme08g00615 Cme-Chr8:3962765 Cme12g00199 Cme-Chr12:2053105 2.73E-70 dispersed
Cme08g00795 Cme-Chr8:5287691 Cme12g00199 Cme-Chr12:2053105 9.41E-09 dispersed
Cme10g00093 Cme-Chr10:668933 Cme12g00199 Cme-Chr12:2053105 0 dispersed
Cme10g01508 Cme-Chr10:18915283 Cme12g00199 Cme-Chr12:2053105 5.86E-153 dispersed
Cme12g00199 Cme-Chr12:2053105 Cme12g01264 Cme-Chr12:20726204 4.12E-84 dispersed
Cme12g01719 Cme-Chr12:23969629 Cme12g00199 Cme-Chr12:2053105 1.79E-21 dispersed
Cme12g00199 Cme-Chr12:2053105 Cme11g01284 Cme-Chr11:19590109 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00199 - - cmo:103504179 944.88