Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00200 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCATCATCAGCAATCAAATCATCATCATCATCATCCTCAGATAAGTAATAGTGATGGATCTCCTCAACATCAACACCTTCTTTCATTACCAACTCAACAACTCTCGTCCGCACCATCGTCCCATGTCGGTGTGGGTGTTGGTGTTGGCTCGATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCAGAGACGGCGCTAAAGTGTCCTCGATGTGATTCTACCAATACGAAGTTTTGTTATTTTAATAACTATAGTCTCTCGCAGCCTCGCCACTTTTGTAAGAGTTGCCGACGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTCCCGGTTGGGGGTGGCTGTCGGAGGAATAAGAAGAATAAAACTAGACGATCGAAGTCTCCAACGGCGGCAGCGACGATGGCGGGTGGAAATGAAAGTCAAGTGATGAATAACAATTCAAACTCTCCTACTACTGCTACAATTCCCTTGCATAGTAGTGCTGAGAATCTTATTGGTCATTTACAGCCTCAACACCCTCACCTTTCATTCATGGCTTCGTTGAATAATTTTTCTCGATTCGGGACATCAAGTTTAGGGTTGAATTTCAACGAGATCCAGACTCAAACTAACAACATCGGTAACGGTGCCCTTCTGAATCATCATCCGTGGCGGAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCGCCAGGGTTGTACCCGTTTCAAATTAGCGGCGGCGACAACACAACAAATTCAATCCTAACACCAATTTCAAGGGGAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTACTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGCATCAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAA 1023 44.67 MDFSSVPIYLDPPPNWHHQQSNHHHHHPQISNSDGSPQHQHLLSLPTQQLSSAPSSHVGVGVGVGSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTAAATMAGGNESQVMNNNSNSPTTATIPLHSSAENLIGHLQPQHPHLSFMASLNNFSRFGTSSLGLNFNEIQTQTNNIGNGALLNHHPWRSSQNFPLSGGLETPPGLYPFQISGGDNTTNSILTPISRGTHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNASNGWTDLSAISSTSSGHISCDFNH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2069742 2071935 + MELO3C020648.2.1 Cme12g00200 343417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00200 340 ProSitePatterns Zinc finger Dof-type signature. 90 126 IPR003851 GO:0003677|GO:0006355
Cme12g00200 340 MobiDBLite consensus disorder prediction 11 40 - -
Cme12g00200 340 Pfam Dof domain, zinc finger 87 142 IPR003851 GO:0003677|GO:0006355
Cme12g00200 340 ProSiteProfiles Zinc finger Dof-type profile. 88 142 IPR003851 GO:0003677|GO:0006355
Cme12g00200 340 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 36 331 - -
Cme12g00200 340 MobiDBLite consensus disorder prediction 133 164 - -
Cme12g00200 340 MobiDBLite consensus disorder prediction 149 164 - -
Cme12g00200 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 331 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01283 Cme12g00200 CCT
Cme11g01283 Cme12g00200 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02612 Cme-Chr4:32047295 Cme12g00200 Cme-Chr12:2069742 1.71E-62 dispersed
Cme08g00542 Cme-Chr8:3407578 Cme12g00200 Cme-Chr12:2069742 9.49E-32 dispersed
Cme09g00505 Cme-Chr9:4859893 Cme12g00200 Cme-Chr12:2069742 2.14E-54 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme12g00200 Cme-Chr12:2069742 5.59E-62 dispersed
Cme11g01764 Cme-Chr11:25878348 Cme12g00200 Cme-Chr12:2069742 3.26E-35 dispersed
Cme11g02277 Cme-Chr11:29863882 Cme12g00200 Cme-Chr12:2069742 6.14E-31 dispersed
Cme12g00200 Cme-Chr12:2069742 Cme12g00341 Cme-Chr12:4721746 1.67E-35 dispersed
Cme02g01804 Cme-Chr2:24832269 Cme12g00200 Cme-Chr12:2069742 1.07E-33 transposed
Cme06g01707 Cme-Chr6:19120053 Cme12g00200 Cme-Chr12:2069742 1.43E-33 transposed
Cme11g01283 Cme-Chr11:19582850 Cme12g00200 Cme-Chr12:2069742 7.98E-58 wgd
Cme12g00200 Cme-Chr12:2069742 Cme08g02396 Cme-Chr8:30824290 4.03E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42286 PF02701 zf-Dof 1.40E-32 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00200 - - csv:101218334 624.394