Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00200 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCATCATCAGCAATCAAATCATCATCATCATCATCCTCAGATAAGTAATAGTGATGGATCTCCTCAACATCAACACCTTCTTTCATTACCAACTCAACAACTCTCGTCCGCACCATCGTCCCATGTCGGTGTGGGTGTTGGTGTTGGCTCGATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCAGAGACGGCGCTAAAGTGTCCTCGATGTGATTCTACCAATACGAAGTTTTGTTATTTTAATAACTATAGTCTCTCGCAGCCTCGCCACTTTTGTAAGAGTTGCCGACGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTCCCGGTTGGGGGTGGCTGTCGGAGGAATAAGAAGAATAAAACTAGACGATCGAAGTCTCCAACGGCGGCAGCGACGATGGCGGGTGGAAATGAAAGTCAAGTGATGAATAACAATTCAAACTCTCCTACTACTGCTACAATTCCCTTGCATAGTAGTGCTGAGAATCTTATTGGTCATTTACAGCCTCAACACCCTCACCTTTCATTCATGGCTTCGTTGAATAATTTTTCTCGATTCGGGACATCAAGTTTAGGGTTGAATTTCAACGAGATCCAGACTCAAACTAACAACATCGGTAACGGTGCCCTTCTGAATCATCATCCGTGGCGGAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCGCCAGGGTTGTACCCGTTTCAAATTAGCGGCGGCGACAACACAACAAATTCAATCCTAACACCAATTTCAAGGGGAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTACTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGCATCAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAA 1023 44.67 MDFSSVPIYLDPPPNWHHQQSNHHHHHPQISNSDGSPQHQHLLSLPTQQLSSAPSSHVGVGVGVGSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTAAATMAGGNESQVMNNNSNSPTTATIPLHSSAENLIGHLQPQHPHLSFMASLNNFSRFGTSSLGLNFNEIQTQTNNIGNGALLNHHPWRSSQNFPLSGGLETPPGLYPFQISGGDNTTNSILTPISRGTHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNASNGWTDLSAISSTSSGHISCDFNH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2069742 2071935 + MELO3C020648.2.1 Cme12g00200 343417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00200 340 ProSitePatterns Zinc finger Dof-type signature. 90 126 IPR003851 GO:0003677|GO:0006355
Cme12g00200 340 MobiDBLite consensus disorder prediction 11 40 - -
Cme12g00200 340 Pfam Dof domain, zinc finger 87 142 IPR003851 GO:0003677|GO:0006355
Cme12g00200 340 ProSiteProfiles Zinc finger Dof-type profile. 88 142 IPR003851 GO:0003677|GO:0006355
Cme12g00200 340 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 36 331 - -
Cme12g00200 340 MobiDBLite consensus disorder prediction 133 164 - -
Cme12g00200 340 MobiDBLite consensus disorder prediction 149 164 - -
Cme12g00200 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 331 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00200 - - - csv:101218334 624.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme11g01283 Cme12g00200 CCT
Cme11g01283 Cme12g00200 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02612 Cme-Chr4:32047295 Cme12g00200 Cme-Chr12:2069742 1.71E-62 dispersed
Cme08g00542 Cme-Chr8:3407578 Cme12g00200 Cme-Chr12:2069742 9.49E-32 dispersed
Cme09g00505 Cme-Chr9:4859893 Cme12g00200 Cme-Chr12:2069742 2.14E-54 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme12g00200 Cme-Chr12:2069742 5.59E-62 dispersed
Cme11g01764 Cme-Chr11:25878348 Cme12g00200 Cme-Chr12:2069742 3.26E-35 dispersed
Cme11g02277 Cme-Chr11:29863882 Cme12g00200 Cme-Chr12:2069742 6.14E-31 dispersed
Cme12g00200 Cme-Chr12:2069742 Cme12g00341 Cme-Chr12:4721746 1.67E-35 dispersed
Cme02g01804 Cme-Chr2:24832269 Cme12g00200 Cme-Chr12:2069742 1.07E-33 transposed
Cme06g01707 Cme-Chr6:19120053 Cme12g00200 Cme-Chr12:2069742 1.43E-33 transposed
Cme11g01283 Cme-Chr11:19582850 Cme12g00200 Cme-Chr12:2069742 7.98E-58 wgd
Cme12g00200 Cme-Chr12:2069742 Cme08g02396 Cme-Chr8:30824290 4.03E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT1G29160 55.6 3.7e-44 174.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 1.2e-39 159.8
Cme09g01866 . 56 151 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.4e-42 168.7
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT2G34140 54.3 1.2e-42 169.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 7.8e-39 157.1
Cme04g02612 CCT,ECH 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.6e-40 163.7
Cme10g00889 . 33 163 C2C2-Dof Transcription Factor Family AT2G37590 62.4 9.8e-38 154.5
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT2G37590 64.0 2.2e-37 153.3
Cme12g00200 CCT,ECH 66 140 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Cme09g01866 . 56 149 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.3e-44 174.9
Cme04g01994 . 136 514 C2C2-Dof Transcription Factor Family AT5G39660 51.4 1.5e-81 300.4
Cme12g00200 CCT,ECH 1 140 C2C2-Dof Transcription Factor Family AT5G02460 56.5 1.4e-38 157.5
Cme08g02396 CCT,ECH 43 123 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.0e-37 153.7
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT5G02460 62.1 4.5e-37 152.5
Cme04g02612 CCT,ECH 54 137 C2C2-Dof Transcription Factor Family AT3G55370 78.6 4.2e-37 152.5
Cme02g01804 CCT 28 335 C2C2-Dof Transcription Factor Family AT5G60850 50.5 7.0e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42286 PF02701 zf-Dof 1.40E-32 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00200 Cme_Chr12 FPKM 3.677823 4.868967 0.217947 0.0 7.085194 8.548753 7.961751 0.422215 0.152195 0.0