Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00230 ATGGGTAGAGGCGGTGAAAACTACGGGAAAAAAGAGATTTTTGCTGCTAACTCATCCAAGAAAGAAACTTATCCAGCCTGGGCAAGAGATGTTCAAGAATGCTTAGAGATATACCAAGTGAACCCTGATCTTGGATTATCAACTGAAGAGGTTGAAAACAAGAGAAAGATCTATGGTTACAATGAGTTGGAGAAACATGAAGGTACTTCAATCTTTAAACTGATTTTAGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCCGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGAGAGGAAGGAGGTGAGATGGAGATCACAGCATTTGTGGAGCCTCTAGTTATTTTCTTGATATTGATTGTTAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCCGAGAAAGCATTGGAAGCTCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTGTTACGAAATGGTAAACGAACTTCAATTGTTGCAAAAGAACTTGTTCCTGGTGATATAGTAGAACTGAGAGTTGGGGATAAGGTGCCTGCTGACATGAGAGTATTGCGTTTAATCAGCTCTACTTTTCGAGTTGAGCAAGGTTCCTTGACAGGTGAGAGTGAAGCAGTGAGCAAGACATCTAAGACTGTGCCAGAAGATACAGATATACAGGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTAAATGGGAATTGTATTTGCATTGTTACCCAAACAGGAATGAGCACTGAACTCGGACAGGTGCATTGTCAGATACAAGAAGCAGCCCAGAGTGAAGATGATACACCATTGAAGAAGAAGTTGAATGAGTTTGGAGAGCTTTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTCTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATACGTCGATGGTTGGCCTGCAAATTTTAAGTTTTCGTTTGAGAAATGTACATATTACTTTGAGATTGCTGTGGCTTTGGCTGTGGCAGCAATTCCTGAAGGTTTGCCTGCGGTCATAACAACATGCTTGGCACTTGGCACTAGGAAGATGGCCCAAAAAAATGCCCTTGTTCGTAAGCTGCCCAGTGTTGAAACACTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGTACTCTAACGACTAATCAGATGGCTGTGGCGAAAATTGTGGCTCTTGGTTCTCGTGTTGGTACTCTACGAGCCTTTGATGTGGAGGGGACGACATATGATCCTTTGGATGGAAAAATAATTGGTTGGCTTGAAGGTCAACTGGATGCTAATCTGCAAATGTTGGCAAAGATTGCTGCCGTTTGTAATGATGCAGGTGTTGAAAAATCTGGCCATCATTTTGTTGCAAGTGGAATGCCTACTGAAGCAGCTCTGAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGTTGAAACTAATGGGGATGTCCTGCGATGCTGCCAAGCTTGGAACAAGAATGAGCAGCGCATTGCTACTTTGGAGTTTGACCGGGACCGTAAATCCATGGGAGTTATCACAAATTCTAAATCAGGGAAGAAATCATTACTCGTGAAGGGTGCTGTTGAAAATCTTCTGGATCGGAGTTCATTTATTCAGCTGCTTGATGGAACTATAGTGAATTTGGACTCAGACTCGAAGAAATATCTCTTAGATTGTTTGCGTGAGATGTCTTCTAGTGCACTAAGGTGTTTAGGTTTTGCATACAAGGAATATCTTCCAGAATTTTCTGACTATACCGTTGGTGATGAAGATCATCCAGCACATCAGCTTCTACTTGACCCATCCAAATACTCTACAATTGAAAGCAATCTTATTTTTGCTGGATTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGCGTCATGGTTATCACAGGAGACAACCAGAACACAGCTGAAGCTATATGTCGAGAAATAGGTGTATTTGGACAACATGAAGCTATAAATTCCAGAAGTTTAACTGGTAAACAATTCATGACAATGAGCCGGGAGGATCAGAAATTTCATCTAAGACAAGATGGAGGACTTCTTTTCTCTAGGGCTGAACCAAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACAGGAGATGGAGTCAATGATGCACCTGCCTTGAAGTTGGCTGATATTGGGATTGCGATGGGCATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCTGATATGGTTCTTGCCGATGACAATTTTAGTACCATAGTCGCTGCAGTTGGTGAAGGAAGATCAATTTACGACAACATGAAGGCTTTTATCAGGTACATGATTTCCTCGAACATCGGTGAGGTTGCATCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTTGTTACAGATGGACCCCCAGCAACTGCATTAGGATTTAATCCACCTGATAACGATATAATGAAGAAACCGCCAAGGAAAAGTGATGACTCGTTGATCACAACCTGGATTTTGATCCGCTATTTGGTGATTGGACTCTACGTAGGGTTAGCAACTGTAGGCGTTTTTATTATTTGGTACACACATGGTTCATTCTTGGGCATTGACCTGTCTGGAGATGGTCACAGTCTCGTCTCTTACTCTCAGCTTGCCAACTGGGGTCAGTGTCCGTCTTGGGAAGGATTCTCCGTGTCACCCTTCACAGCAGGGGATGAAGTCTTCAACTTCGATTCAGATCCATGCGAGTACTTCCGCTCAGGCAAGATCAAGGCATCAACCCTCTCACTTTCTGTTCTGGTCGCCATCGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGTAGCTTGTTGACAATGCCCCCTTGGGTTAACCCCTGGCTCCTCCTTGCAATGTCAGTTTCATTCGGCTTGCATTTCTTGATTCTGTATGTGCCATTCCTTGCCAAGATTTTCGGCATTGTCCCGCTGTCCTTGAACGAATGGCTCTTGGTTCTAGCTGTGGCATTGCCCGTAATCATAATTGATGAGATTCTGAAATTCATTGGAAGACTCACGAGTGGTTTGAGGACTTCTCGCCCGAGCAGATCATCGAAGCAGAAATCAGAGTGA 3198 43.09 MGRGGENYGKKEIFAANSSKKETYPAWARDVQECLEIYQVNPDLGLSTEEVENKRKIYGYNELEKHEGTSIFKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVLRNGKRTSIVAKELVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTSKTVPEDTDIQGKKCMVFAGTTVVNGNCICIVTQTGMSTELGQVHCQIQEAAQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGKIIGWLEGQLDANLQMLAKIAAVCNDAGVEKSGHHFVASGMPTEAALKVLVEKMGLPEGYDSSSVETNGDVLRCCQAWNKNEQRIATLEFDRDRKSMGVITNSKSGKKSLLVKGAVENLLDRSSFIQLLDGTIVNLDSDSKKYLLDCLREMSSSALRCLGFAYKEYLPEFSDYTVGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAICREIGVFGQHEAINSRSLTGKQFMTMSREDQKFHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDNDIMKKPPRKSDDSLITTWILIRYLVIGLYVGLATVGVFIIWYTHGSFLGIDLSGDGHSLVSYSQLANWGQCPSWEGFSVSPFTAGDEVFNFDSDPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKIFGIVPLSLNEWLLVLAVALPVIIIDEILKFIGRLTSGLRTSRPSRSSKQKSE 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2597422 2603610 + MELO3C020683.2.1 Cme12g00230 343447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00230 1065 Gene3D - 45 262 - -
Cme12g00230 1065 Pfam haloacid dehalogenase-like hydrolase 377 747 - -
Cme12g00230 1065 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1046 IPR023298 -
Cme12g00230 1065 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Cme12g00230 1065 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1064 - -
Cme12g00230 1065 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1064 - -
Cme12g00230 1065 SUPERFAMILY HAD-like 378 837 IPR036412 -
Cme12g00230 1065 Pfam E1-E2 ATPase 147 360 - -
Cme12g00230 1065 Gene3D - 377 778 IPR023214 -
Cme12g00230 1065 SFLD C1.7: P-type atpase like 361 785 - -
Cme12g00230 1065 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 629 IPR023299 GO:0000166
Cme12g00230 1065 Pfam Cation transporting ATPase, C-terminus 818 1044 IPR006068 -
Cme12g00230 1065 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Cme12g00230 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g00230 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 307 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g00230 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 707 817 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g00230 1065 Gene3D - 77 1046 - -
Cme12g00230 1065 SUPERFAMILY Calcium ATPase, transduction domain A 149 257 IPR008250 -
Cme12g00230 1065 SFLD p-type atpase 361 785 IPR044492 -
Cme12g00230 1065 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Cme12g00230 1065 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Cme12g00230 1065 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Cme12g00230 1065 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Cme12g00230 1065 PRINTS P-type cation-transporting ATPase superfamily signature 733 752 - -
Cme12g00230 1065 PRINTS P-type cation-transporting ATPase superfamily signature 757 769 - -
Cme12g00230 1065 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Cme12g00230 1065 Gene3D - 390 632 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02114 Cme-Chr3:28374166 Cme12g00230 Cme-Chr12:2597422 4.72E-07 dispersed
Cme09g01069 Cme-Chr9:14953029 Cme12g00230 Cme-Chr12:2597422 6.76E-95 dispersed
Cme12g00230 Cme-Chr12:2597422 Cme05g01855 Cme-Chr5:27319766 1.74E-60 dispersed
Cme12g00230 Cme-Chr12:2597422 Cme08g00653 Cme-Chr8:4271327 3.60E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00230 K01537 - csv:101206729 2055.03