Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00271 ATGGCTGATGTTGGTCAGAACAACCCCGCTGATTTTCCAGCTCTTCCAACCCACGGTGGCCAATACGTTCAGTATAACATTTTTGGGAATCCCTTCGAAATCACCTCCAAATATCGTCCTCCGATTATGCCTATTGGTCGCGGCGCATACGGAATCGTTTGTTCTGTTTTGAATTCGGAGACCAATGAAATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTACGCCATTTGGATCATGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACTGATCTTCACCAAATAATCCGCTCCAATCAAAGTTTATCAGAAGAGCATTGTCAGATTCTCAGAGGACTGAAATACATACATTCGGCAAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAACTGTGATCTTAAAATATGCGACTTTGGTCTTGCTCGACCAACTTCAGAAAATGAATGTATGACGGAATATGTTGTGACAAGATGGTACAGAGCACCTGAGCTTCTTTTGAACTCTGATTATACAGCTGCTATCGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGCGATTATTGACCGAGGGCACTCATTCAAAAGCAATTCCTTGGTTCTGTTTTGATAGTTCTTATCAGTTTCCATTTGAAATATTGGTTTCGGCCAATGATTTTCAACTTCTTGGCACACCAACCGAGTCAGATCTTGGTTTTATCCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCGTTAGCAATTGATCTTGTGGATAAAATGTTGACATTTGACCCAACAAAGAGAATTACTGTTGAAGAAGCATTAGCACATCCATACCTAGAAAGATTGCATGACACAGCCGATGAGCCGGTTTGCTCAGAGCCATTCTCGTTTGAGTTTGAGCAACAATACTTAGACGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTGGCACTCAATCCAGAATTTGCATGA 1188 41.58 MADVGQNNPADFPALPTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTEGTHSKAIPWFCFDSSYQFPFEILVSANDFQLLGTPTESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTKRITVEEALAHPYLERLHDTADEPVCSEPFSFEFEQQYLDEEQMKEMIYREALALNPEFA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3136210 3140211 - MELO3C020718.2.1 Cme12g00271 343488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00271 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cme12g00271 395 Gene3D Transferase(Phosphotransferase) domain 1 124 376 - -
Cme12g00271 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 278 394 - -
Cme12g00271 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 249 - -
Cme12g00271 395 Gene3D Phosphorylase Kinase; domain 1 16 123 - -
Cme12g00271 395 Pfam Protein kinase domain 44 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00271 395 ProSiteProfiles Protein kinase domain profile. 39 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00271 395 SMART serkin_6 39 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00271 395 SUPERFAMILY Protein kinase-like (PK-like) 44 357 IPR011009 -
Cme12g00271 395 ProSitePatterns MAP kinase signature. 74 172 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme12g00271 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 278 394 - -
Cme12g00271 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 249 - -
Cme12g00271 395 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01425 Cme-Chr3:23635980 Cme12g00271 Cme-Chr12:3136210 0 dispersed
Cme09g01791 Cme-Chr9:22327506 Cme12g00271 Cme-Chr12:3136210 2.28E-176 dispersed
Cme12g00271 Cme-Chr12:3136210 Cme12g00284 Cme-Chr12:3472518 2.07E-164 dispersed
Cme12g00271 Cme-Chr12:3136210 Cme11g02185 Cme-Chr11:29178118 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65294 PF00069 Pkinase 2.70E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00271 K20536 - csv:101202796 716.457