Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00271 | ATGGCTGATGTTGGTCAGAACAACCCCGCTGATTTTCCAGCTCTTCCAACCCACGGTGGCCAATACGTTCAGTATAACATTTTTGGGAATCCCTTCGAAATCACCTCCAAATATCGTCCTCCGATTATGCCTATTGGTCGCGGCGCATACGGAATCGTTTGTTCTGTTTTGAATTCGGAGACCAATGAAATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTACGCCATTTGGATCATGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACTGATCTTCACCAAATAATCCGCTCCAATCAAAGTTTATCAGAAGAGCATTGTCAGATTCTCAGAGGACTGAAATACATACATTCGGCAAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAACTGTGATCTTAAAATATGCGACTTTGGTCTTGCTCGACCAACTTCAGAAAATGAATGTATGACGGAATATGTTGTGACAAGATGGTACAGAGCACCTGAGCTTCTTTTGAACTCTGATTATACAGCTGCTATCGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGCGATTATTGACCGAGGGCACTCATTCAAAAGCAATTCCTTGGTTCTGTTTTGATAGTTCTTATCAGTTTCCATTTGAAATATTGGTTTCGGCCAATGATTTTCAACTTCTTGGCACACCAACCGAGTCAGATCTTGGTTTTATCCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCGTTAGCAATTGATCTTGTGGATAAAATGTTGACATTTGACCCAACAAAGAGAATTACTGTTGAAGAAGCATTAGCACATCCATACCTAGAAAGATTGCATGACACAGCCGATGAGCCGGTTTGCTCAGAGCCATTCTCGTTTGAGTTTGAGCAACAATACTTAGACGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTGGCACTCAATCCAGAATTTGCATGA | 1188 | 41.58 | MADVGQNNPADFPALPTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTEGTHSKAIPWFCFDSSYQFPFEILVSANDFQLLGTPTESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTKRITVEEALAHPYLERLHDTADEPVCSEPFSFEFEQQYLDEEQMKEMIYREALALNPEFA | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3136210 | 3140211 | - | MELO3C020718.2.1 | Cme12g00271 | 343488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00271 | 395 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 156 | 168 | IPR008271 | GO:0004672|GO:0006468 | |
Cme12g00271 | 395 | Gene3D | Transferase(Phosphotransferase) domain 1 | 124 | 376 | - | - | |
Cme12g00271 | 395 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 278 | 394 | - | - | |
Cme12g00271 | 395 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 15 | 249 | - | - | |
Cme12g00271 | 395 | Gene3D | Phosphorylase Kinase; domain 1 | 16 | 123 | - | - | |
Cme12g00271 | 395 | Pfam | Protein kinase domain | 44 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00271 | 395 | ProSiteProfiles | Protein kinase domain profile. | 39 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00271 | 395 | SMART | serkin_6 | 39 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00271 | 395 | SUPERFAMILY | Protein kinase-like (PK-like) | 44 | 357 | IPR011009 | - | |
Cme12g00271 | 395 | ProSitePatterns | MAP kinase signature. | 74 | 172 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cme12g00271 | 395 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 278 | 394 | - | - | |
Cme12g00271 | 395 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 15 | 249 | - | - | |
Cme12g00271 | 395 | ProSitePatterns | Protein kinases ATP-binding region signature. | 45 | 69 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01425 | Cme-Chr3:23635980 | Cme12g00271 | Cme-Chr12:3136210 | 0 | dispersed | |
Cme09g01791 | Cme-Chr9:22327506 | Cme12g00271 | Cme-Chr12:3136210 | 2.28E-176 | dispersed | |
Cme12g00271 | Cme-Chr12:3136210 | Cme12g00284 | Cme-Chr12:3472518 | 2.07E-164 | dispersed | |
Cme12g00271 | Cme-Chr12:3136210 | Cme11g02185 | Cme-Chr11:29178118 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65294 | PF00069 | Pkinase | 2.70E-68 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00271 | K20536 | - | csv:101202796 | 716.457 |