Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00284 ATGGAGAATGATTCTTCTTCCGCCATGGATATCAAAGGTACTCCCACTTACGACTCTAAATACTTACTCTACAATGTTCTTGGCAGCTTCTTCGAGGTCTCCGCCAAATACTCCCCTTCAATTCAACCTGTTGGACGTGGTGCTTACGGCATTGTTTGTTGTACGACTAATTCTGAGACAAAAGAAGAGGTTGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCTAAGAGGACGCTTCGAGAGATTAAACTGCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATTATTCCACCACCAGATAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTACACCAGATCATTCGCTCTTCCCAGGATTTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACATTCTGCAAATGTCTTGCACCGAGATCTTAAACCAAGCAACCTGCTCCTTAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACGGAATATGTTGTAACACGATGGTATCGAGCCCCTGAGCTACTACTCAACACTTCTGAATACACTGCAGCGATAGATATTTGGTCGGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAACCATTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCTGATGATTCAGATCTCGGGTTTCTTAGAAGTGATAACGCAAGGAAGTATGTTAAGCAACTTCCTCATTTCCCAAAACAACCGCTGATCGAAAAGTTCCCAGATCTTCCTCCACTGGCAGTTGATCTCGCAGAGAGGATGCTACTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCCATGAATCACCCGTATATAGTAAGTCTTCATGAGATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAACTTATATGGAGGGAGTCTATCAAGTTCAATCCAAATCACATTTAG 1113 40.97 MENDSSSAMDIKGTPTYDSKYLLYNVLGSFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPDKEKFNDVYIVYELMDTDLHQIIRSSQDLTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESIKFNPNHI 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3472518 3476218 + MELO3C026848.2.1 Cme12g00284 343501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00284 370 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Cme12g00284 370 SUPERFAMILY Protein kinase-like (PK-like) 41 330 IPR011009 -
Cme12g00284 370 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
Cme12g00284 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Cme12g00284 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 17 369 - -
Cme12g00284 370 Pfam Protein kinase domain 41 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00284 370 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00284 370 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme12g00284 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 369 - -
Cme12g00284 370 SMART serkin_6 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00284 370 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02185 Cme-Chr11:29178118 Cme12g00284 Cme-Chr12:3472518 0 dispersed
Cme12g00271 Cme-Chr12:3136210 Cme12g00284 Cme-Chr12:3472518 2.07E-164 dispersed
Cme12g00284 Cme-Chr12:3472518 Cme11g01943 Cme-Chr11:27494941 2.38E-115 dispersed
Cme12g00284 Cme-Chr12:3472518 Cme09g01791 Cme-Chr9:22327506 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65295 PF00069 Pkinase 1.70E-69 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00284 K04371 - csv:101218403 744.962