Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00287 ATGGGTTGTTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGAATATCGAACAAAACAACCCAAATACCTTCAATTCCAAAACCCATAAGCCCGATGATCGAACCCCTTCAGATAAAGCCAAAGTTATTTCAAATTTGGTGAAGAGGGATTCTGATGTGAAGGTAGTTGTGTCTAAAAATGACCAATTAGCTTTAGATGTAAAGAAATTGAATTTGAAAGATGAGGTTTCTGAGGAAGGAGAAGCCAATGGCCGTGCTAAGACGTTTACATTTGAAGAACTTGCAGCCGCGACGGGCAACTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGCAAAAAGTTAATGAGGTTGTAGCAATTAAACAGCTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTGGAAGTTTTGACTTTAAGTCTAGCTGATCATCCCAACCTTGTAAAACTTATTGGCTTTTGTGCTGAAGGGGATCAGAGATTGTTGGTTTATGAATATATGCCATTGGGTTCATTGGAAAACCATTTACACGATCTTCGACCTGGTGCCAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCCAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTTATATATCGTGATCTGAAATGCTCAAACATTTTGCTCGGTGAAGGATATCATCCAAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACAAGGGTTATGGGCACATATGGGTATTGCGCTCCAGATTATGCAATGACAGGCCAGCTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCGGAGCAAAATCTTGTGGCTTGGGCTCGACCCTTGTTCCGAGACCGAAAGAAGTTCTCACAAATGGTTGATCCAATGCTCCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCGAATATGCGACCAGTTATAACTGATGTTGTAACAGCTTTAAACTACCTTGCGTCCCAGAAATACGATCCCCAAACTCAACCAAACCAAAACTCCCAAAAGAGACCATCTTCTCATAAAATGGAACGGGGCGATGATAAGAGGGAAACTTCAGACAACGATGGGTCAGAGAGAGAGTGA 1266 42.5 MGCFRCTGSSSKKSENIEQNNPNTFNSKTHKPDDRTPSDKAKVISNLVKRDSDVKVVVSKNDQLALDVKKLNLKDEVSEEGEANGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVITDVVTALNYLASQKYDPQTQPNQNSQKRPSSHKMERGDDKRETSDNDGSERE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3527094 3530511 + MELO3C026851.2.1 Cme12g00287 343504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00287 421 Gene3D Phosphorylase Kinase; domain 1 70 178 - -
Cme12g00287 421 MobiDBLite consensus disorder prediction 398 421 - -
Cme12g00287 421 CDD STKc_IRAK 108 377 - -
Cme12g00287 421 ProSiteProfiles Protein kinase domain profile. 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00287 421 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 410 - -
Cme12g00287 421 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Cme12g00287 421 PANTHER OS07G0668900 PROTEIN 1 410 - -
Cme12g00287 421 SUPERFAMILY Protein kinase-like (PK-like) 88 396 IPR011009 -
Cme12g00287 421 MobiDBLite consensus disorder prediction 383 421 - -
Cme12g00287 421 MobiDBLite consensus disorder prediction 383 397 - -
Cme12g00287 421 MobiDBLite consensus disorder prediction 7 27 - -
Cme12g00287 421 Pfam Protein kinase domain 107 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00287 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Cme12g00287 421 SMART serkin_6 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00287 421 MobiDBLite consensus disorder prediction 1 39 - -
Cme12g00287 421 Gene3D Transferase(Phosphotransferase) domain 1 179 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01750 Cme-Chr11:25640838 Cme12g00287 Cme-Chr12:3527094 0 dispersed
Cme11g02350 Cme-Chr11:30503519 Cme12g00287 Cme-Chr12:3527094 7.88E-178 dispersed
Cme12g00287 Cme-Chr12:3527094 Cme10g00828 Cme-Chr10:5472250 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65296 PF00069 Pkinase 3.80E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00287 - - csv:101215066 827.009