Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00305 ATGTCTCCGAAGTCTCTAATGGCAAAGAATAGATTCGTTTGCGAGATATGCAACAAGGGATTTCAGAGAGACCAGAACTTGCAGCTTCATCGACGAGGGCACAACTTGCCATGGAAGCTTCGACAAAGGACGAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAGAAGAGTTGCGTACACCACGACCCGGCGAGGGCGCTCGGTGACCTCACCGGGATCAAGAAGCACTACAGTAGGAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACATTATTTTCCAGAAAAGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCGAGAATAAATCATCATCCAACCTTCATCAACAACAACTTTTCCCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCCCGCCTTCCCCGGCCACTGCCACTGCCACTGCCACTGCCGTCATTGATCAAACCTCCCTCAGCCACCATTTCCCTAACATTATATTCGACCATGACGACGACCACAAGCCTCCTCCTCTTTCACTATCATCCCAGCCCCAGCTCCCGCTCTGGCTCGACCCACCACCAAATTCTAACTCCTTTTCTCTGCTGCCCCCGCCATCCACACCTTCTCTGAAAACCCTACATTCTTCCCAGAAAATCAATACCCTTTTTTGTCGGAGCCGTTAA 780 47.82 MSPKSLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHPTFINNNFSPTSSSLLLQPNFPPSPATATATATAVIDQTSLSHHFPNIIFDHDDDHKPPPLSLSSQPQLPLWLDPPPNSNSFSLLPPPSTPSLKTLHSSQKINTLFCRSR 259
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3952902 3955324 - MELO3C005046.2.1 Cme12g00305 343522
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00305 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Cme12g00305 259 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 232 - -
Cme12g00305 259 SUPERFAMILY beta-beta-alpha zinc fingers 11 108 IPR036236 -
Cme12g00305 259 SMART c2h2final6 88 108 IPR013087 -
Cme12g00305 259 SMART c2h2final6 53 83 IPR013087 -
Cme12g00305 259 SMART c2h2final6 12 34 IPR013087 -
Cme12g00305 259 Gene3D Classic Zinc Finger 8 35 - -
Cme12g00305 259 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Cme12g00305 259 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 232 - -
Cme12g00305 259 Pfam Zinc-finger double-stranded RNA-binding 12 34 IPR022755 -
Cme12g00305 259 Gene3D Classic Zinc Finger 45 136 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00305 Cme-Chr12:3952902 Cme08g00831 Cme-Chr8:5504754 7.23E-97 dispersed
Cme12g00305 Cme-Chr12:3952902 Cme04g02537 Cme-Chr4:31606721 8.21E-99 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42291 PF12171 zf-C2H2_jaz 6.60E-05 CL0361 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00305 K25870 - csv:101212420 412.92