Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g00305 | ATGTCTCCGAAGTCTCTAATGGCAAAGAATAGATTCGTTTGCGAGATATGCAACAAGGGATTTCAGAGAGACCAGAACTTGCAGCTTCATCGACGAGGGCACAACTTGCCATGGAAGCTTCGACAAAGGACGAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAGAAGAGTTGCGTACACCACGACCCGGCGAGGGCGCTCGGTGACCTCACCGGGATCAAGAAGCACTACAGTAGGAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACATTATTTTCCAGAAAAGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCGAGAATAAATCATCATCCAACCTTCATCAACAACAACTTTTCCCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCCCGCCTTCCCCGGCCACTGCCACTGCCACTGCCACTGCCGTCATTGATCAAACCTCCCTCAGCCACCATTTCCCTAACATTATATTCGACCATGACGACGACCACAAGCCTCCTCCTCTTTCACTATCATCCCAGCCCCAGCTCCCGCTCTGGCTCGACCCACCACCAAATTCTAACTCCTTTTCTCTGCTGCCCCCGCCATCCACACCTTCTCTGAAAACCCTACATTCTTCCCAGAAAATCAATACCCTTTTTTGTCGGAGCCGTTAA | 780 | 47.82 | MSPKSLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHPTFINNNFSPTSSSLLLQPNFPPSPATATATATAVIDQTSLSHHFPNIIFDHDDDHKPPPLSLSSQPQLPLWLDPPPNSNSFSLLPPPSTPSLKTLHSSQKINTLFCRSR | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3952902 | 3955324 | - | MELO3C005046.2.1 | Cme12g00305 | 343522 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g00305 | 259 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 34 | IPR013087 | - | |
| Cme12g00305 | 259 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 232 | - | - | |
| Cme12g00305 | 259 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 108 | IPR036236 | - | |
| Cme12g00305 | 259 | SMART | c2h2final6 | 88 | 108 | IPR013087 | - | |
| Cme12g00305 | 259 | SMART | c2h2final6 | 53 | 83 | IPR013087 | - | |
| Cme12g00305 | 259 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
| Cme12g00305 | 259 | Gene3D | Classic Zinc Finger | 8 | 35 | - | - | |
| Cme12g00305 | 259 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
| Cme12g00305 | 259 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 1 | 232 | - | - | |
| Cme12g00305 | 259 | Pfam | Zinc-finger double-stranded RNA-binding | 12 | 34 | IPR022755 | - | |
| Cme12g00305 | 259 | Gene3D | Classic Zinc Finger | 45 | 136 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme12g00305 | Cme-Chr12:3952902 | Cme08g00831 | Cme-Chr8:5504754 | 7.23E-97 | dispersed | |
| Cme12g00305 | Cme-Chr12:3952902 | Cme04g02537 | Cme-Chr4:31606721 | 8.21E-99 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42291 | PF12171 | zf-C2H2_jaz | 6.60E-05 | CL0361 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g00305 | K25870 | - | csv:101212420 | 412.92 |