Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00306 ATGGCGGGGGCAGCCGGTGGGAAGTCGCTCGAGCAAACACCGACATGGGCCGTTGCCGTTGTTTGCTTTGTTTTGCTCGTCGTCTCTATTTTCATCGAATATAGTCTCCATCTTATCGGACATTGGCTAAAGAAGAGACACAAACGGGCGTTATTTGAAGCATTAGAGAAGATCAAATCAGAGCTTATGTTATTGGGATTTATATCATTGCTACTGACGGTGGGGCAAGGACCAATAACGGAGATATGTATTCCACAACATGTAGCTGCAACCTGGCATCCATGTACAAAGGAAAGAGAAGATGAGATGAACAAAGAGATGGAGAAATCTGTGCAACATTTGGGTCATAATCGCCGGAGACTCCTTCATCTCGTCGGAAATGGTGGAAGTTTCCGGCGGAGTTTGGCCGCTGCGGGAGGAGCTGATAAATGTGCTGCCAAGGGTAAAGCTTCATTTATCTCAGCAGAAGGAATTCATCAACTTCATATCTTCATTTTTGTGTTGGCTGTTTTCCATGTTTTGTATTGTGTTCTAACTTATGCTTTGGCTAGAGCTAAGATGAGGAGTTGGAAAACATGGGAAAAAGAGACCAAAACTGCTGAATACCAATTCTCACATGATCCGGAGAGATTTAGGTTTGCAAGAGACACCTCATTTGGGAGAAGACATTTGAGCTTTTGGACCAAAAATCCTGCCTTCATGTGGATCGTTTGTTTCTTCAGACAATTTGTAAGATCTGTTCCAAAAGTTGATTACTTGACATTAAGACATGGGTTTATAATGGCACATTTAGCACCTCAAAGTCATACACAATTCGATTTTCAAAAATACATTAATAGATCCCTTGAAGAAGACTTCAAAGTTGTTGTGGGAATCAGCCCACCAATTTGGTTCTTTGCTGTTCTATTTCTCCTCTCAAACACTCACGGTTGGAGGGCATATCTATGGCTTCCATTCATCCCACTAATCATTTTGCTGTTGGTTGGAACAAAATTGCAAGTGATCATAACGAAAATGGCACTAAGAATACAAGAAAGAGGAGAAGTAGTGAAGGGCGTGCCGGTGGTGGAGCCTGGGGATGACCTTTTTTGGTTTAATCGACCTCGTCTTATTCTTTATCTCATCAACTTTGTTCTCTTTCAAAATGCCTTCCAAGTTGCTTTCTTTGCTTGGACTTGGTATGAGTTTGGGTTGAATTCTTGTTTCCACGAGCATATAGAGGATGTGGTGATCAGAATTTCCATGGGGGTGCTTGTACAAATCCTTTGCAGTTATGTTACTCTTCCTCTTTATGCACTAGTCACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAACGAGAGAGTGGCAGAGGCCCTTCGCAATTGGTACCACTCGGCTCGAAAGCACATCAAACACAACCGCGGTTCGGTCACTCCAATGTCGAGCCGACCCGCCACCCCGACTCACAGCATGTCACCTGTCCACCTTCTCCGACACTACAAGAGTGAAGTCGATAGCTTCCACACCTCACCGAGAAGGTTCGACACCGACCGTTGGGACAATGATTCGCCCTCACCGTCTCGCCATGTTGATGGTTCGTCTTCCTCACAACCCCATGTCGAGATGGGAGGTTATGAAAAAGATCCCGTTGATTCAAGTTCGTCTCAAGTTGACCCGATTCAACCATCCCGAAACCGCAATCAACATGAGATTCATATTGGGGGCCCCAAAGACTTTTCATTTGATAGAGTTGAATGA 1743 44.23 MAGAAGGKSLEQTPTWAVAVVCFVLLVVSIFIEYSLHLIGHWLKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPITEICIPQHVAATWHPCTKEREDEMNKEMEKSVQHLGHNRRRLLHLVGNGGSFRRSLAAAGGADKCAAKGKASFISAEGIHQLHIFIFVLAVFHVLYCVLTYALARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTKNPAFMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGWRAYLWLPFIPLIILLLVGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQVAFFAWTWYEFGLNSCFHEHIEDVVIRISMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAEALRNWYHSARKHIKHNRGSVTPMSSRPATPTHSMSPVHLLRHYKSEVDSFHTSPRRFDTDRWDNDSPSPSRHVDGSSSSQPHVEMGGYEKDPVDSSSSQVDPIQPSRNRNQHEIHIGGPKDFSFDRVE 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3967524 3974371 - MELO3C005044.2.1 Cme12g00306 343523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00306 580 MobiDBLite consensus disorder prediction 565 580 - -
Cme12g00306 580 MobiDBLite consensus disorder prediction 467 486 - -
Cme12g00306 580 PANTHER MLO-LIKE PROTEIN 1 1 577 IPR004326 GO:0006952|GO:0016021
Cme12g00306 580 PANTHER MLO-LIKE PROTEIN 1 577 - -
Cme12g00306 580 MobiDBLite consensus disorder prediction 521 535 - -
Cme12g00306 580 MobiDBLite consensus disorder prediction 503 580 - -
Cme12g00306 580 Pfam Mlo family 8 495 IPR004326 GO:0006952|GO:0016021
Cme12g00306 580 MobiDBLite consensus disorder prediction 503 520 - -
Cme12g00306 580 MobiDBLite consensus disorder prediction 470 484 - -
Cme12g00306 580 MobiDBLite consensus disorder prediction 544 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00306 K08472 MLO; mlo protein - csv:101217225 1122.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01333 Cme-Chr3:22883415 Cme12g00306 Cme-Chr12:3967524 2.59E-154 dispersed
Cme08g00265 Cme-Chr8:1713766 Cme12g00306 Cme-Chr12:3967524 7.86E-159 dispersed
Cme08g01000 Cme-Chr8:6523121 Cme12g00306 Cme-Chr12:3967524 5.21E-160 dispersed
Cme10g00061 Cme-Chr10:463879 Cme12g00306 Cme-Chr12:3967524 0 dispersed
Cme11g00865 Cme-Chr11:11566380 Cme12g00306 Cme-Chr12:3967524 1.16E-42 dispersed
Cme11g02497 Cme-Chr11:31537758 Cme12g00306 Cme-Chr12:3967524 8.85E-95 dispersed
Cme12g00306 Cme-Chr12:3967524 Cme12g00310 Cme-Chr12:4097788 4.85E-170 proximal
Cme06g01218 Cme-Chr6:9850093 Cme12g00306 Cme-Chr12:3967524 2.35E-111 transposed
Cme06g02377 Cme-Chr6:30988474 Cme12g00306 Cme-Chr12:3967524 8.16E-42 transposed
Cme09g00335 Cme-Chr9:2854788 Cme12g00306 Cme-Chr12:3967524 1.83E-103 transposed
Cme11g00033 Cme-Chr11:337486 Cme12g00306 Cme-Chr12:3967524 6.46E-62 transposed
Cme11g00866 Cme-Chr11:11571938 Cme12g00306 Cme-Chr12:3967524 7.73E-15 transposed
Cme11g02498 Cme-Chr11:31543434 Cme12g00306 Cme-Chr12:3967524 1.75E-28 transposed
Cme11g01786 Cme-Chr11:26042054 Cme12g00306 Cme-Chr12:3967524 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00404 . 5 526 MLO family AT5G53760 70.2 1.2e-211 733.0
Cme09g00335 . 3 566 MLO family AT5G53760 65.5 3.7e-202 701.4
Cme06g01218 . 7 459 MLO family AT5G53760 50.9 9.7e-126 447.6
Cme12g00310 . 10 469 MLO family AT3G45290 55.0 1.5e-138 490.0
Cme07g00404 . 1 524 MLO family AT1G26700 68.0 7.0e-206 713.8
Cme09g00335 . 3 566 MLO family AT1G26700 64.5 4.6e-197 684.5
Cme12g00306 . 8 534 MLO family AT2G39200 63.8 6.0e-192 667.5
Cme11g01786 . 8 585 MLO family AT2G39200 60.2 6.2e-189 657.5
Cme10g00061 . 7 462 MLO family AT2G39200 60.6 3.6e-160 562.0
Cme11g01786 . 8 416 MLO family AT1G61560 67.5 1.2e-160 563.1
Cme12g00306 . 1 416 MLO family AT1G61560 66.7 2.7e-157 552.0
Cme10g00061 . 7 379 MLO family AT1G61560 58.6 8.3e-127 450.7
Cme08g01000 . 11 477 MLO family AT2G17430 59.4 1.2e-152 537.0
Cme03g01333 . 2 451 MLO family AT2G17430 54.4 2.9e-135 479.2
Cme08g01000 . 28 535 MLO family AT2G17480 62.2 5.6e-177 617.8
Cme03g01333 . 12 458 MLO family AT2G17480 56.9 1.4e-140 496.9
Cme12g00306 . 8 463 MLO family AT2G17480 53.4 3.7e-128 455.7
Cme08g01000 . 28 395 MLO family AT1G42560 56.7 1.4e-115 413.3
Cme03g01333 . 12 352 MLO family AT1G42560 57.0 5.9e-111 397.9
Cme11g02497 . 2 269 MLO family AT4G24250 57.5 2.2e-84 309.7
Cme11g00033 . 2 208 MLO family AT4G24250 54.1 2.8e-55 213.0
Cme08g01000 . 9 396 MLO family AT5G65970 62.6 4.0e-133 471.9
Cme11g01786 . 2 381 MLO family AT5G65970 51.6 8.5e-107 384.4
Cme12g00306 . 2 381 MLO family AT5G65970 51.6 1.5e-103 373.6
Cme03g01333 . 9 352 MLO family AT5G65970 53.2 2.4e-101 366.3
Cme06g02324 . 6 335 MLO family AT5G65970 51.5 1.6e-89 327.0
Cme03g01333 . 2 496 MLO family AT2G33670 57.0 6.7e-155 544.3
Cme08g01000 . 28 489 MLO family AT2G33670 56.1 9.4e-141 497.3
Cme12g00306 . 63 506 MLO family AT1G11310 64.9 3.6e-164 575.1
Cme11g01786 . 63 520 MLO family AT1G11310 63.1 2.6e-162 568.9
Cme10g00061 . 62 483 MLO family AT1G11310 58.2 8.1e-140 494.2
Cme11g02497 . 2 359 MLO family AT2G44110 61.5 7.4e-130 461.1
Cme11g00033 . 2 234 MLO family AT2G44110 51.5 4.1e-56 216.1
Cme11g02497 . 1 335 MLO family AT4G02600 81.0 1.9e-160 562.8
Cme11g00033 . 2 235 MLO family AT4G02600 52.1 2.6e-64 243.4
Cme11g02498 . 1 150 MLO family AT4G02600 65.3 1.7e-44 177.6
Cme06g01218 . 3 556 MLO family AT1G11000 66.2 6.8e-212 733.8
Cme11g02497 . 1 335 MLO family AT4G02600 81.0 1.9e-160 562.8
Cme11g00033 . 2 235 MLO family AT4G02600 52.1 2.6e-64 243.4
Cme11g02498 . 1 150 MLO family AT4G02600 65.3 1.7e-44 177.6
Cme12g00306 . 63 506 MLO family AT1G11310 64.9 3.6e-164 575.1
Cme11g01786 . 63 520 MLO family AT1G11310 63.1 2.6e-162 568.9
Cme10g00061 . 62 483 MLO family AT1G11310 58.2 8.1e-140 494.2
Cme12g00310 . 10 469 MLO family AT3G45290 55.0 1.5e-138 490.0
Cme06g01218 . 3 556 MLO family AT1G11000 66.2 6.8e-212 733.8
Cme03g01333 . 2 496 MLO family AT2G33670 57.0 6.7e-155 544.3
Cme08g01000 . 28 489 MLO family AT2G33670 56.1 9.4e-141 497.3
Cme11g01786 . 8 416 MLO family AT1G61560 67.5 1.2e-160 563.1
Cme12g00306 . 1 416 MLO family AT1G61560 66.7 2.7e-157 552.0
Cme10g00061 . 7 379 MLO family AT1G61560 58.6 8.3e-127 450.7
Cme08g01000 . 11 477 MLO family AT2G17430 59.4 1.2e-152 537.0
Cme03g01333 . 2 451 MLO family AT2G17430 54.4 2.9e-135 479.2
Cme08g01000 . 28 535 MLO family AT2G17480 62.2 5.6e-177 617.8
Cme03g01333 . 12 458 MLO family AT2G17480 56.9 1.4e-140 496.9
Cme12g00306 . 8 463 MLO family AT2G17480 53.4 3.7e-128 455.7
Cme08g01000 . 28 395 MLO family AT1G42560 56.7 1.4e-115 413.3
Cme03g01333 . 12 352 MLO family AT1G42560 57.0 5.9e-111 397.9
Cme08g01000 . 9 396 MLO family AT5G65970 62.6 4.0e-133 471.9
Cme11g01786 . 2 381 MLO family AT5G65970 51.6 8.5e-107 384.4
Cme12g00306 . 2 381 MLO family AT5G65970 51.6 1.5e-103 373.6
Cme03g01333 . 9 352 MLO family AT5G65970 53.2 2.4e-101 366.3
Cme06g02324 . 6 335 MLO family AT5G65970 51.5 1.6e-89 327.0
Cme07g00404 . 5 526 MLO family AT5G53760 70.2 1.2e-211 733.0
Cme09g00335 . 3 566 MLO family AT5G53760 65.5 3.7e-202 701.4
Cme06g01218 . 7 459 MLO family AT5G53760 50.9 9.7e-126 447.6
Cme12g00306 . 8 534 MLO family AT2G39200 63.8 6.0e-192 667.5
Cme11g01786 . 8 585 MLO family AT2G39200 60.2 6.2e-189 657.5
Cme10g00061 . 7 462 MLO family AT2G39200 60.6 3.6e-160 562.0
Cme11g02497 . 2 269 MLO family AT4G24250 57.5 2.2e-84 309.7
Cme11g00033 . 2 208 MLO family AT4G24250 54.1 2.8e-55 213.0
Cme07g00404 . 1 524 MLO family AT1G26700 68.0 7.0e-206 713.8
Cme09g00335 . 3 566 MLO family AT1G26700 64.5 4.6e-197 684.5
Cme11g02497 . 2 359 MLO family AT2G44110 61.5 7.4e-130 461.1
Cme11g00033 . 2 234 MLO family AT2G44110 51.5 4.1e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001805 3 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 2 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00306 Cme_Chr12 FPKM 8.1939 8.917714 0.730278 0.762474 28.020878 31.515833 31.281343 0.0 0.608119 0.685389